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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGTTTGACATGAGGCCCCATAATCAAACCCTTGAACTCTATGGTAAACTCTGCCGTGAAAGGACAAACAAGTATATGGTCAAAAGTAGACAGATACAGgttttttcttatagctctagttctttaaatgttgatccattgatttaggcaaacaatttccattacctttgacttctgaattcttttttcag

Basic information

species Glycine max
transcript GLYMA05G17350.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G17350.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G52270.1 (Arabidopsis thaliana), 5'ss of exon 3
CAAGTTTGACATGAGGCCCCATAATCAAACCCTTGAACTCTATGGTAAACTCTGCCGTGAAAGGACAAACAAGTATATGGTCAAAAGTAGACAGATACAGgttttttctta-tagc-tctagttctttaaatgttgatccattgatttaggcaaacaatttccattacctttgacttctgaattcttttttcag
||| ||||| |||||||| |||||  |||   |||||  |||||| | | | ||||||||||| |||||||||||||||| ||||| ||||||||| |||||| ||    | | |  | | ||   ||  |  || |  ||   |  |   |      ||||||| | | |    |||||  ||  ||   |||
CAAATTTGATATGAGGCCTCATAACGAAAATATTGAAAGCTATGGGAGATTGTGCCGTGAAAGAACAAACAAGTATATGGGCAAAAATAGACAGATCCAGgttgttgtaaagtggtgtgtggtgacttggagtttcaaaca--aacctcctctgcatttttccatgatcat--gtttctgg-tttcttgaccag

upper sequence: GLYMA05G17350.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g03980.t01 (Vitis vinifera), 5'ss of exon 3
CAAGTTTGACATGAGGCCCCATAATCAAACCCTTGAACTCTATGGTAAACTCTGCCGTGAAAGGACAAACAAGTATATGGTCAAAAGTAGACAGATACAGgttttttcttatagctctagttctttaaatgttgatccattgatttaggcaaacaatttccattacctttgacttctgaattcttttttcag
||| |||||||||| |||||||||| ||| | || |   ||||||||||||||| |||||  |||| | ||| ||||||  |||||||||||||||||||||| |   | || |||  |    |||   || |||  |  ||||  |        | |   |||    ||    | | ||| |  || ||||
CAAATTTGACATGAAGCCCCATAATGAAAACATTCAGAACTATGGTAAACTCTGTCGTGAGCGGACGAGCAAATATATGACCAAAAGTAGACAGATACAGgttctag-tgattgcttcatacatttg--tgatgacac-ctgatacattttctttagtcttattctactt---ctttaaatcccattctcag