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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttcattctcttgcaacgtatacatcttaagatgcctccttccccatcccttttatttatctaaatgtgtgactgaatactcttatcttttttat...

Basic information

species Glycine max
transcript GLYMA05G14330.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23726817|gb|BU761411.1|BU761411
EST:     GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG                         CGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
genomic: GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: gi|23726961|gb|BU761493.1|BU761493
EST:     GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG                         CGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
genomic: GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: gi|192295112|gb|FG986831.1|FG986831
EST:     GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG                         CGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
genomic: GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: gi|193568471|gb|FK522624.1|FK522624
EST:     CTGAAGCTACTAACTATGACAG                         CGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
genomic: CTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: gi|151400518|gb|EV270332.1|EV270332
EST:     GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG                         CGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
genomic: GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: gi|15200376|gb|BI424317.1|BI424317
EST:     GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG                         CGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
genomic: GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: gi|298165082|gb|HO011131.1|HO011131
EST:     GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG                         CGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
genomic: GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: gi|213590582|gb|DB973327.1|DB973327
EST:     GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG                         CGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
genomic: GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: gi|298174725|gb|HO014756.1|HO014756
EST:     GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG                         CGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
genomic: GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: gi|6482269|gb|AW201540.1|AW201540
EST:     GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG                         CGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGGACCGGGTGGCTA
genomic: GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTG-ACCGTGTGGCTA
EST: gi|151409026|gb|EV278834.1|EV278834
EST:     GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG                         CGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
genomic: GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: gi|208112458|gb|GD910181.1|GD910181
EST:     GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG                         CGTATATGGCGAACCAATTCCTGTTAAAGGAACTTGCTGACC
genomic: GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATTCCTGTTAA-GGAACTTGCTGACC
EST: gi|151410622|gb|EV280437.1|EV280437
EST:     GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG                         CGTATATGGCGAACCAATTTCCTGTTAAGGAACTTGCTGACCGTGTGGCTA
genomic: GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATT-CCTGTTAAGGAACTTGCTGACCGTGTGGCTA
EST: gi|16348120|gb|BI973715.1|BI973715
EST:     GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG                         CGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
genomic: GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: gi|192303719|gb|FG994557.1|FG994557
EST:     GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG                         CGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
genomic: GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: gi|208325123|gb|GE118357.1|GE118357
EST:     GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG                         CGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
genomic: GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: gi|298162963|gb|HO011696.1|HO011696
EST:     GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG                         CGTATATGGCGGACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
genomic: GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: gi|298195782|gb|HO044173.1|HO044173
EST:     GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG                         CGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
genomic: GGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttca ... ttcttttcagCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGgtttacttcattctcttgcaacgtatacatcttaagatgcctccttccccatcccttttatttatctaaatgtgtgactgaatactcttatcttttttat

- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcccc