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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTGTGTGAATGGAGGGACATTGTTGCCCGTGCAGAGGATGAGAGTACAGGATATGTATTGCCAAATAAATCTGTTCTTGAAATCGgtatgaaactcatgaaaattctgtgtatcttaatgttagcaatttggctgtatgctcagaatttaatttgtatttacttatttaaaag

Basic information

species Glycine max
transcript GLYMA05G11200.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G11200.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G35910.1 (Arabidopsis thaliana), 5'ss of exon 10
GGGTTGTGTGAATGGAGGGACATTGTTGCCCGTGCAGAGGATGAGAGTACAGGATATGTATTGCCAAATAAATCTGTTCTTGAAATCGgtatgaaactcatgaaaattctgtgtatcttaatgttagcaa----------tttggctgt----atgctcagaatttaatttgtatttacttatttaaaag
||| | ||||||||||||||  |  |||| ||||| ||||||||||| || || |||||||||||||| |||  | | |||||||| |||||  |   | ||| | |||  | |  |    ||  ||  |          ||||||  |    | | ||  ||  |||| |    || ||    ||| ||
GGGCTTTGTGAATGGAGGGATTTCATTGCACGTGCGGAGGATGAGAGCACTGGTTATGTATTGCCAAACAAAGTTCTCCTTGAAATAGgtatatagagc-tgagagttcaattttaccatctggcagagagtggatttgttttggcaattcctaagttcctaacgtaatctaatgttgctatcctaatag

upper sequence: GLYMA05G11200.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0056g01320.t01 (Vitis vinifera), 5'ss of exon 9
GGGTTGTGTGAATGGAGGGACATTGTTGCCCGTGCAGAGGATGAGAGTACAGGATATGTATTGCCAAATAAATCTGTTCTTGAAATCGgtatgaaactcatgaaaattctgtgtatcttaatgttagcaatttggctgtatgctcagaatttaatttgtatttactt-----atttaaaag
||  | | ||||||| | ||  | ||||| ||||| |||||||| ||||| || ||| ||||||| || ||| || ||||||||||||||||    ||  ||  | ||       | || || |||    ||| | |  || || |   ||||   |   || ||||     ||| |||||
GGCCTTTTTGAATGGCGAGATGTGGTTGCTCGTGCTGAGGATGAAAGTACTGGTTATATATTGCCCAACAAAACTCTTCTTGAAATCGgtattg--cttgtgccagttaatcaatttttcattttacttcttttgtt-catactgaacttttatgctactttcactttttaaattaaaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37996904|gb|CF808493.1|CF808493
EST:     GGATGAGAGTACAGGATATGTATTGCCAAATAAATCTGTTCTTGAAATCG                         CTAAGCAGATGCCTCTTACTACAAGCAAGCTACGGCGATTGGTGAAGTCAA
genomic: GGATGAGAGTACAGGATATGTATTGCCAAATAAATCTGTTCTTGAAATCGgtatgaaact ... tatttaaaagCTAAGCAGATGCCTCTTACTACAAGCAAGCTACGGCGATTGGTGAAGTCAA