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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAACATTGTGGTGCCATAACAGAATCTGTTATTCGGAATTTCACTCGGCATATTCTCTCAGGGTTGGCTTATTTACATAGCAAAAAAACCATTCATAGgtacattcaccagcttgaagtgcttcatactaacttgaactcaacctttagaatgatgcatatgcaactacttcgtttttgtttgaaaaatgattatgttttctagaattttaattcattttagatttggaactttttgtaacatgtttatttattgtttgttctcatgtatgcatatag

Basic information

species Glycine max
transcript GLYMA05G10050.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G10050.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0567g00010.t01 (Vitis vinifera), 5'ss of exon 5
GTGAACATTGTGGTGCCATAACAGAATCTGTTATTCGGAATTTCACTCGGCATATTCTCTCAGGGTTGGCTTATTTACATAGCAAAAAAACCATTCATAGgtacattcaccagcttgaagtgcttcatactaacttgaactcaacctttagaatgatgcatatgcaactacttcgtttttgtttgaaaaatgattatgttttctagaattttaattcattttagatttggaactttttgtaacatgtttatttattgtttgttctcatgtatgcatatag
||||||||||||| || || |||||||||||| |||| ||||| ||||| |||||||| || ||| ||||||| ||||| |||| ||| || || || |||||     || |   |    |  ||  || ||   | |     |   |||  || ||     |   | || ||  | |||    ||   ||||   |  | || ||||     | ||                                                               
GTGAACATTGTGGAGCTATTACAGAATCTGTTGTTCGCAATTTTACTCGCCATATTCTTTCTGGGCTGGCTTACTTACACAGCACAAAGACAATACACAGgta-----acaa---taggattattattattattattattattattattattattat-----tattatta-ttattatttaccagagtgatgaaattaatctc-agaacac--actc---------------------------------------------------------------

upper sequence: GLYMA05G10050.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s1194g00010.t01 (Vitis vinifera), 5'ss of exon 4
GTGAACATTGTGGTGCCATAACAGAATCTGTTATTCGGAATTTCACTCGGCATATTCTCTCAGGGTTGGCTTATTTACATAGCAAAAAAACCATTCATAGgtacattcaccagcttgaagtgcttcatactaacttgaactcaacctttagaatgatgcatatgcaactacttcgtttttgt-ttgaaaaatgattatgttttctagaattttaattcattttagatttggaactttttgtaacatgtttatttattgtttgttctcatgtatgcatatag
||||||||||||| || || |||||||||||| |||| ||||| ||||| |||||||| || ||| ||||||| ||||| |||| ||| || || || |||||     |   | ||    |  ||  || ||  ||    | |      ||| ||||| |  |      |   |    |  | || | ||| ||   | |      |||||  |  |  ||  | ||||| |                                                 
GTGAACATTGTGGAGCTATTACAGAATCTGTTGTTCGCAATTTTACTCGCCATATTCTTTCTGGGCTGGCTTACTTACACAGCACAAAGACAATACACAGgta--acaataggattattattattattatta--ttattattatttaccagagtgatgaaattaatctcagaacacactcatattaacaaaggagagtatc-----gaattgcatcttgtta-aaatttgcag------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9901544|gb|BE610512.1|BE610512
EST:     CATATTCTCTCAGGGTTGGCTTATTTACATAGCNNNNNNNCCATTCATAG                         GGACATCAAAGGGGCTAACTTGCTTGTTGACTCTGCTGGAGTTGTTAAGCT
genomic: CATATTCTCTCAGGGTTGGCTTATTTACATAGCAAAAAAACCATTCATAGgtacattcac ... atgcatatagGGACATCAAAGGGGCTAACTTGCTTGTTGACTCTGCTGGAGTTGTTAAGCT