Sequence
atgc intronic sequence ATGC exonic sequenceAGTGGAATAGATTCTGTAAGCTTTGATTCCTCTGAAGTGTTGGTAGCTGCTGGAGCTGCGAGTGGTACCATCAAACTTTGGGACTTAGAAGAGGCAAAGAgtatgcagttgcttgccatttcctttaatggttttaaaacaccaatgaaaagagatttgagtagtctcacaaaatatattcattatttttaccataaaatttttaaattggatctttgacttgctatgtttctttggtag
Basic information
species | Glycine max |
transcript | GLYMA05G09360.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G09360.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G160702_T01 (Zea mays), 5'ss of exon 3
AGTGGAATAGATTCTGTAAGCTTTGATTCCTCTGAAGTGTTGGTAGCTGCTGGAGCTGCGAGTGGTACCATCAAACTTTGGGACTTAGAAGAGGCAAAGAgtatgcagttgcttgccatttcctttaatggttttaaaacaccaatgaaaagagatttgagtagtctcacaaaatatattcattatttttaccataaaatttttaaattggatctttgacttgctatgtttctttggtag
|||| | || || || | ||||||||| | |||||||| || ||||| ||||| || ||||| || || || || ||||| || || |||||||||||||||||| | | |||| ||| | | | | | ||||| | || |||| | || | ||||| | | | |
AGTGCTGTGGAGTCGGTTGGTTTTGATTCCACGGAAGTGTTTGTGGCTGCAGGAGCAGCCAGTGGAACAATAAAGCTATGGGATTTGGAGGAGGCAAAGAgtatgcagata-tgaatatttaacttactatatgtgta-tatgtatgaatcg----ttcagtaattgcatctcttg-gctcattttctatgcag----------------------------------------------
upper sequence: GLYMA05G09360.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 3
AGTGGAATAGATTCTGTAAGCTTTGATTCCTCTGAAGTGTTGGTAGCTGCTGGAGCTGCGAGTGGTACCATCAAACTTTGGGACTTAGAAGAGGCAAAGAgtatgcagttgcttgccatttcctttaatggttttaaaacaccaatgaaaagagatttgagtagtctcacaaaatatattcattatttttaccataaaatttttaaattggatctttgacttgctatgtttctttggtag
|||| | || || || | ||||||||| | ||||| || || ||||| ||||| || ||||| || || ||||| ||||| || || ||||||||||||||||| | | |||| ||| | | | ||| | | ||||||| | | | || || | | |
AGTGCTGTGGAGTCGGTTGGTTTTGATTCCACCGAAGTTTTTGTGGCTGCAGGAGCAGCCAGTGGAACAATAAAACTATGGGATTTGGAGGAGGCAAAGAgtatgcaaata-tgaatatttaacttact---------atatatatgcatgaatcgttgagtaattctatcttttg-gctcgtttcctatgcag----------------------------------------------
upper sequence: GLYMA05G09360.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G23430.2 (Arabidopsis thaliana), 5'ss of exon 4
AGTGGAATAGATTCTGTAAGCTTTGATTCCTCTGAAGTGTTGGTAGCTGCTGGAGCTGCGAGTGGTACCATCAAACTTTGGGACTTAGAAGAGGCAAAGAgtatgcagttgcttgccatttcctttaatggttttaaaacaccaatgaaaagagatttgagtagtctcacaaaatatattcattatttttaccataaaatttttaaattggatctttgacttgctatgtttctttggtag
|||||||| ||||| || | |||||| | || || || || || || || |||||||| |||||||| |||||||||||||| ||||| ||||||||||||| | ||| | ||| || | |||| | | || | || | | || | || | | || | || ||| | | | |
AGTGGAATTGATTCAGTGACGTTTGATGCTTCGGAGGTCTTAGTTGCAGCAGGAGCTGCTAGTGGTACTATCAAACTTTGGGATTTAGAGGAGGCAAAGAgtaag------------------ttttgtagttccaagagaccattcttattggactcgatttgacttctgtga-gtacttacgtgttctttcacttgctttgttgagtag-----------------------------
upper sequence: GLYMA05G09360.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv10s0071g01150.t01 (Vitis vinifera), 5'ss of exon 3
AGTGGAATAGATTCTGTAAGCTTTGATTCCTCTGAAGTGTTGGTAGCTGCTGGAGCTGCGAGTGGTACCATCAAACTTTGGGACTTAGAAGAGGCAAAGAgtatgcagttgcttgccatttcctttaatggttttaaaacaccaatgaaaagagatttgagtagtctcacaaaat-atattcattatttttaccataaaatttttaaattggatctttgacttgctatgtttctttggtag
|||||||| ||||| ||||| ||||| || || || ||||||| ||||| ||||| || || || || ||||| || ||||| || || ||||||||||||||||| |||| || | ||||| | | ||| | ||| || | ||| | |||| | |||| || ||| ||| | |||| | |
AGTGGAATTGATTCGGTAAGTTTTGACTCTTCAGAGCTGTTGGTGGCTGCAGGAGCGGCAAGCGGCACAATCAAGCTATGGGATTTGGAGGAGGCAAAGAgtatgca---------cattagactttgggtgtttaatatatgaattc--tgttcttttgatatgttgttaaactgatatctagagattttctg-------ttgtaatgtggttttttgtatag-----------------
upper sequence: GLYMA05G09360.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S9_241V6.1 (Physcomitrella patens), 5'ss of exon 3
AGTGGAATAGATTCTGTAAGCTTTGATTCCTCTGAAGTGTTGGTAGCTGCTGGAGCTGCGAGTGGTACCATCAAACTTTGGGACTTAGAAGAGGCAAAGAgtatgca-gtt---gcttgccatttcctttaatggttttaaa----acaccaatgaaaagagatttga----gtagtct-cacaaaatatattcattattttta--ccataaaatttttaaattggatctttgacttgctatgtttct-----ttggtag---------------------
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AGTGCAGTGGAATCGGTTACTTTTGATACAGCAGAGGTTGTAGTCGTCGCCGGAGCTGCAAGTGGTACCATCAAACTTTGGGACCTTGAAGAAGCTAAAAgtaagcttgttagagctttctctctctctcctccggtccaagtattacatgattaatttgagtttctattccatggtttgtgtggtgtgcacgtattcattctagatcatggatgcgatgcttcgtacttctaatcaggcaaaattttagatcttactgacatttttatacctgggtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193724235|gb|FK662283.1|FK662283EST: TGGAGCTGCGAGTGGTACCATCAAACTTTGGGACTTAGAAGAGGCAAAGN TTGTTCGTACTCTTACCAGTC
genomic: TGGAGCTGCGAGTGGTACCATCAAACTTTGGGACTTAGAAGAGGCAAAGAgtatgcagtt ... tctttggtagTTGTTCGTACTCTTACCAGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTGGAATAGATTCTGTAAGCTTTGATTCCTCTGAAGTGTTGGTAGCTGCTGGAGCTGCGAGTGGTACCATCAAACTTTGGGACTTAGAAGAGGCAAAGAgtatgcagttgcttgccatttcctttaatggttttaaaacaccaatgaaaagagatttgagtagtctcacaaaatatattcattatttttaccataaaatttttaaattggatctttgacttgctatgtttctttggtag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG