1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCCAAGCAGCATGAAGATCAAGGTGGTAGCACCTCCTGAGAGAAAGTATAGTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAACAGgtatgtttctgttctttaatatgattaatgaactattgctttgaatgcttgctaatgatacaaattatcgcttgagtgcag
species | Glycine max |
transcript | GLYMA05G09290.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAACAG ATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCATEST: gi|31308197|gb|CD393400.1|CD393400
genomic: GTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAACAGgtatgtttct ... ttgagtgcagATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCAT
EST: GTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAACAG ATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCATEST: gi|41145410|gb|CK605621.1|CK605621
genomic: GTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAACAGgtatgtttct ... ttgagtgcagATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCAT
EST: GTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAACAG ATGTGGATTGCG-AGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCATEST: gi|31307670|gb|CD392873.1|CD392873
genomic: GTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAACAGgtatgtttct ... ttgagtgcagATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCAT
EST: GTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAACAG ATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCAT
genomic: GTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAACAGgtatgtttct ... ttgagtgcagATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCAAGCAGCATGAAGATCAAGGTGGTAGCACCTCCTGAGAGAAAGTATAGTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAACAGgtatgtttctgttctttaatatgattaatgaactattgctttgaatgcttgctaatgatacaaattatcgcttgagtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG