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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTAGAGTTGAATCGTTTGAGGACAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTTTGGCTGTACAAACTgtgagctttcttaacccttccttatccttcatatgtaatgcttatgttttcattgtttttattaagctatcccaaagagatcttatttttgtttagaagc...

Basic information

species Glycine max
transcript GLYMA05G08220.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G08220.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g04730.t01 (Vitis vinifera), 5'ss of exon 5
TCTTAGAGTTGAATCGTTTGAGGACAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTTTGGCTGTACAAACTgtgagctttcttaacccttccttatc--cttcatatgtaatgcttatgttttcattgtttttattaagctatcccaaagagatcttatttttgtttagaagc---
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TCTTCAAGTTGCATTATTCGAAGACAACTCTTGGCGTAAGATAAAGTTCAGACTTTTTGTGGCCAGAGATGTTTTCCTTGTATTTTTGGCTGTACAAACTgtgagttcagtgaaatttgcgtaacaaatttcctat-caatcttcttattttga--attttaaagtagtagttc--atgacatctggaattaggggtgcaacttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21600809|gb|BQ611140.1|BQ611140
EST:     GACTTTTTGTGGCAAGGGATGTTTTCCTTGNNNNNNNGGCTGTACAAACT                         GTGATTGCAGCTATTGGTGGCTTTTCATACATCATGGACAAAGATGGTTCC
genomic: GACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTTTGGCTGTACAAACTgtgagctttc ... atttttccagGTGATTGCAGCTATTGGTGGCTTTTCATACATCATGGACAAAGATGGTTCC