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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATGATACCCTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGgttgtgtacctttttaattttctcatttttagaatatgcatgagtccattttgtagctgtgccacctaggtttaatctcacaaattagggaaacttggaa...

Basic information

species Glycine max
transcript GLYMA05G07610.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G07610.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G147430_T02 (Zea mays), 5'ss of exon 3
ATTATGATACCCTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGgttgtgtacctttttaattttctcatttttagaatatgcatgagtccattttgtagctgtgccacctaggtttaatctcacaaattagggaaacttggaa-
| ||||| || ||||| ||||||||||| ||||| || | ||| | | | ||||| ||||||||||| ||||||||||| || |  || |  ||||| ||||    || |  |   || || ||| | ||| ||  |  |    |    |   ||  ||   ||   |  || ||| ||| || ||             | 
ACTATGACACACTGCTGGAAAATATACATGGTCTGAAGGAAGGAAGGTCAGTTCAGGTTCCAATATATGATTTCAAGTCAAGCTGCCGGACTGGTTATAGgtaaattatcactgctatctt-tcaatattacaagcttaagccttaaggtccata-ttgcatcattcat-ttgaatatcataatttcttatgtgcaaacag

upper sequence: GLYMA05G07610.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G73980.1 (Arabidopsis thaliana), 5'ss of exon 3
ATTATGATACCCTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGgt-tgtgtaccttt------ttaattttctcatttttagaatatgcatg-agtccattttgtagctgtgccacctaggtttaatctcacaaattagggaaacttggaa--------------------------------------
| |||||||| || || || |||||||| ||||| |  |  || || |||||||| ||||||||||| || |||||||| |||||||| ||||||||||||| | | ||   ||      |  |||| ||  | |||  ||  ||     || |    || ||  ||     ||| ||    |  |   |  | |    | ||    |                                      
ACTATGATACACTTCTTGACAATATACATGGTCTAAGGGATGGAAAACCTGTTCAGGTTCCAATATATGACTTCAAGTCGAGTTCTCGAATAGGTTACAGgtatatatattcttcgttggtgcatttactactatttcaaacttgtggacagacggcgttatacttgaatt-cctgggaaccacttgttagttgataagagctacacagctgcaatgacttatcagtttcttcgtgctttgtatag

upper sequence: GLYMA05G07610.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv17s0000g04650.t01 (Vitis vinifera), 5'ss of exon 2
ATTATGATACCCTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGgttgtgtacct--ttttaattttctcatttttagaatatgcatgagtccattttgtagctgtgccacctaggtttaatctcacaaattagggaaacttggaa
||||||  ||  |||| || ||||| || ||| | |||||||||||||| ||||||||||| || |||||||| || ||||| |||||||||||||||||||||  || |   ||||  |||| |||    |    |||   |   | | |  | |  || |    |   |  ||  |  | ||  |||  |  |||||   
ATTATGGCACATTGCTTGAGAATATCCATGGTTTAAAAGCAGGGAAGCCCGTTCAAGTTCCTATTTACGATTTTAAATCTAGCTCTCGCATAGGTTACAGgttggttatccacttttttttttttcagaactcatttatattttgtttcctccttttccttttttgctctgtatttcttgcccag-ttactgttacttgag-