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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAGTTGCATACCATGTTGCCCAGGCACTAGATCATTGTAGCTTGGAAAACCGTAAAATATATCATGATCTGAATGCATATAGGATTCTTTTTGATGAGgtaagattgggaatctatcattatgaactaattgtttgttttgtatattatggcaccgtgttttcagtttttgttgtgaaatatattctgcatgatgcat...

Basic information

species Glycine max
transcript GLYMA05G06140.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G054634_T01 (Zea mays), 5'ss of exon 4
CAGAGTTGCATACCATGTTGCCCAGGCACTAGATCATTGTAGCTTGGAAAACCGTAAAATATATCATGATCTGAATGCATATAGGATTCTTTTTGATGAGgta-------agattg--ggaatctatcattatgaactaattgtttgttttgtatattatggcaccgtgttttcagtttttgttgtgaaatatattctgcatgatgcat
 || ||||||||     |||| || || || || ||||| |     || ||| | ||||| ||||||||| ||||||| |||||| | |||||||||||||||        | |||  |  | ||   | | |  ||||  | ||| || ||     | |  ||  ||   | || ||| |  ||||||| ||||| |           
GAGGGTTGCATATTTCATTGCGCAAGCTCTCGACCATTGCAATGCTGAGAACAGGAAAATCTATCATGATTTGAATGCTTATAGGGTACTTTTTGATGAGgtacacaacaggtttgctgacacctcctagtttttactacattttttttctgctggcttttccattgtaactacattttcttctgtgaaa-atattttttt--------

upper sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G054634_T02 (Zea mays), 5'ss of exon 4
CAGAGTTGCATACCATGTTGCCCAGGCACTAGATCATTGTAGCTTGGAAAACCGTAAAATATATCATGATCTGAATGCATATAGGATTCTTTTTGATGAGgta-------agattg--ggaatctatcattatgaactaattgtttgttttgtatattatggcaccgtgttttcagtttttgttgtgaaa-tatattctgcatgatgcat--
           |     |||| || || || || ||||| |     || ||| | ||||| ||||||||| ||||||| |||||| | |||||||||||||||        | |||  |  | ||   | | |  ||||  | ||| || ||     | |  ||  ||   | || ||| |  ||||||| ||| || |  ||  || |   
-----------ATTTCATTGCGCAAGCTCTCGACCATTGCAATGCTGAGAACAGGAAAATCTATCATGATTTGAATGCTTATAGGGTACTTTTTGATGAGGTACACAACAGgtttgctgacacctcctagtttttactacattttttttctgctggcttttccattgtaactacattttcttctgtgaaaatattttttttatc-tgtaagg

upper sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 4
CAGAGTTGCATACCATGTTGCCCAGGCACTAGATCATTGTAGCTTGGAAAACCGTAAAATATATCATGATCTGAATGCATATAGGATTCTTTTTGATGAGgtaagattggga--atctatcattatgaa-ctaattgtttgttttgtatattatggcaccg---tgttttcagtttttgttgtgaaatatattctgcatgatgcat
 |||||||||||  || |||| |||||||| ||||||||||     |||||||| || || ||||||||| |||||||||||||  |||||||||||||||||||    | |  |||| || | |||   || ||||||  |||  ||| |   ||  | |     | ||||| || | || |   | |||   |  || |     
GAGAGTTGCATATTATATTGCTCAGGCACTTGATCATTGTAATACAGAAAACCGGAAGATCTATCATGATTTGAATGCATATAGAGTTCTTTTTGATGAGgtaagtcatgaattatctctcttcatgtttcttattgttgatttgctatgtctaggggctgatacatcttcagattcttttatttga-atacattagatca-----