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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTACAAAAGCTGGGGCAGACCGTGTTCTCGCTTGTGACCTTCATTCAGGGCAGTCCATGGGTTACTTTGATATTCCTGTTGATCATGTACACTGTCAGgtaagtaggttcttaatggttgtagtttatttattggtaacatgtttcctaatactattgtttatgatgtccactag

Basic information

species Glycine max
transcript GLYMA05G06110.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G06110.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G35390.3 (Arabidopsis thaliana), 5'ss of exon 3
TATTACAAAAGCTGGGGCAGACCGTGTTCTCGCTTGTGACCTTCATTCAGGGCAGTCCATGGGTTACTTTGATATTCCTGTTGATCATGTACACTGTCAGgt----------aagtaggttcttaatggttgtagtttatttattggtaacatgtttcctaatac-tattgtttatga-tgtccactag------
||| ||  ||||||| ||||| || ||||| |||||||| ||||||||||| ||||| |||||||| ||||| ||||| || || |||||  |||| |||||          |   | |||||| ||     |  |||||  ||||     ||| | | |  |   || |   | |   ||   | | |      
TATCACTGAAGCTGGTGCAGATCGAGTTCTTGCTTGTGATCTTCATTCAGGACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctctaaagccacgttcttgatacccctc-tttatgcattgtgtgtatgctcctttgtgtataatacctttatctgcttaattgtttcag

upper sequence: GLYMA05G06110.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G32380.1 (Arabidopsis thaliana), 5'ss of exon 4
TATTACAAAAGCTGGGGCAGACCGTGTTCTCGCTTGTGACCTTCATTCAGGGCAGTCCATGGGTTACTTTGATATTCCTGTTGATCATGTACACTGTCAGgtaagtaggttcttaatggttgtagttta------tttattggtaacatgtttcctaatactattgtttatgatgtccactag----
||| ||| |||| || |||||  | ||||| |||||||| ||||||||||| || ||||||||||| ||||| || || || ||||||||  | || ||||||  |    | | ||   || |  |  |      | || |  | |         ||| |   |     ||  ||   ||       
TATAACAGAAGCCGGTGCAGATAGGGTTCTGGCTTGTGATCTTCATTCAGGACAATCCATGGGTTATTTTGACATACCAGTGGATCATGTCTATTGCCAGgtatcttaagtttcaacctttttgatagacaagcctctactttttatgcaacctttaaaatcttacacaattgtgattacatttcag

upper sequence: GLYMA05G06110.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0012g00530.t01 (Vitis vinifera), 5'ss of exon 4
TATTACAAAAGCTGGGGCAGACCGTGTTCTCGCTTGTGACCTTCATTCAGGGCAGTCCATGGGTTACTTTGATATTCCTGTTGATCATGTACACTGTCAGgtaagtaggttcttaatggttgtag----tttatttattggtaac---atgtttcctaat---actattgtttatgatgtccactag--
||| || ||||| || || ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||  || | |||||||||| ||  || | |    ||||       |||| | ||  | ||   || |  |  |||   | || ||||| |  ||| |||     
TATCACCAAAGCAGGTGCGGACCGTGTTCTTGCTTGTGATCTTCATTCTGGGCAGTCCATGGGTTACTTTGATATTCCTGTGGATCACATATATTGTCAGgtaattaatttttaagccattgtttgatccttatctttttctgactccatatcactgaatgaaattactgtttgttttgtgcacacaag

upper sequence: GLYMA05G06110.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S42_193V6.2 (Physcomitrella patens), 5'ss of exon 4
TATTACAAAAGCTGGGGCAGACCGTGTTCTCGCTTGTGACCTTCATTCAGGGCAGTCCATGGGTTACTTTGATATTCCTGTTGATCATGTACACTGTCAGgtaagta-ggttcttaa----tggttgtagtttatttattggtaacatgtttcctaatactattg-tttatgatgtccactag-------------------------------------
 || ||  | ||||| ||  |  | || || |||||||| ||||||||||||||||| ||||| || ||||| ||| | |||||||| ||  |  ||||||| |||| | ||||||     |  || ||     |  |||    |   ||     ||     |   |||||  | | | ||                                       
AATCACTGAGGCTGGAGCCAATAGAGTGCTGGCTTGTGATCTTCATTCAGGGCAGTCAATGGGATATTTTGACATTTCCGTTGATCACGTTTATGGTCAGgtgagtatgattcttagctcgtacttttaccaagtgcattatgtatgggtcgtgcaacgaggtaactttattcttttcgctttgaatgacctttgattaatctcggagccttgtgtgcag

upper sequence: GLYMA05G06110.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S123_105V6.1 (Physcomitrella patens), 5'ss of exon 4
TATTACAAAAGCTGGGGCAGACCGTGTTCTCGCTTGTGACCTTCATTCAGGGCAGTCCATGGGTTACTTTGATATTCCTGTTGATCATGTACACTGTCAGgtaagtaggttcttaatggttgtagtttatttattggtaacatgtt--tcctaatactattgtttatgatgtccactag----------------------------------------------------------------------------------------------------
 |||||  ||||||||||  |  | ||  | |||||||| ||||| ||||| |||||||||||||||||||| ||| |||| ||||||||  |  ||||||| || |  ||   ||   || |  |||  |||||  ||| || |   |  ||| | |||||||  |  | |    | |                                                                                                    
AATTACTGAAGCTGGGGCCAATAGAGTATTGGCTTGTGATCTTCACTCAGGCCAGTCCATGGGTTACTTTGACATTTCTGTCGATCATGTGTATGGTCAGgtgagcattttaacaagttttattattttattatttttaaaatttaaattttaaaattattgttattcttatttttttgttattctccctcaagtgtaacatgttctatttgtgctcggaggaaaattcacatgttttattttaaaggttattgtctaattgggaaaccttgtatgcag

upper sequence: GLYMA05G06110.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S152_123V6.1 (Physcomitrella patens), 5'ss of exon 4
TATTACAAAAGCTGGGGCAGACCGTGTTCTCGCTTGTGACCTTCATTCAGGGCAGTCCATGGGTTACTTTGATATTCCTGTTGATCATGTACACTGTCAGgtaagt----------aggttcttaatggttgtag---tttatttattggtaacatgtttcctaatactattgtttatgatgtccactag----------
 |||||  ||||||||||| ||||||| ||| |||||||||| || || || ||||| ||||| |||||||||||||| ||||| |||||  |  | || ||||||          |  | | | |  ||| |      | |||  |||   |||||||||  ||| | ||||    || | |   ||||          
AATTACTGAAGCTGGGGCAAACCGTGTGCTCACTTGTGACCTGCACTCTGGCCAGTCGATGGGCTACTTTGATATTCCCGTTGACCATGTTTATGGCCAAgtaagttatctatctgaattacctgaaagttatgaagcctaattcgttgtagacatgtttcacaattccattgcggctgctcttagctagcttcttgatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925715|gb|AW831741.1|AW831741
EST:     GGCAGTCCATGGGTTACTTTGATATTCCTGTTGATCATGTACACTGTCAG                         CCCGTGATCCTTGATTATCTTGCCAGCAAGACAATAAGTTCAAGTGACTTG
genomic: GGCAGTCCATGGGTTACTTTGATATTCCTGTTGATCATGTACACTGTCAGgtaagtaggt ... tgtccactagCCCGTGATCCTTGATTATCTTGCCAGCAAGACAATAAGTTCAAGTGACTTG
EST: gi|58018515|gb|CX705257.1|CX705257
EST:     GGCAGTCCATGGGTTACTTTGATATTCCTGTTGATCATGTACACTGTCAG                         CCCGTGATCCTTGATTATCTTGCCAGCAAGACAATAAGTTCAAGTGACTTG
genomic: GGCAGTCCATGGGTTACTTTGATATTCCTGTTGATCATGTACACTGTCAGgtaagtaggt ... tgtccactagCCCGTGATCCTTGATTATCTTGCCAGCAAGACAATAAGTTCAAGTGACTTG
EST: gi|22929545|gb|BU546684.1|BU546684
EST:     GGCAGTCCATGGGTTACNNNGATATTCCTGTTGATCATGTACACTGTCAG                         CCCGTGATCCTTGATTATCTTGCCAGCAAGACAATAAGTTCAAGTGACTTG
genomic: GGCAGTCCATGGGTTACTTTGATATTCCTGTTGATCATGTACACTGTCAGgtaagtaggt ... tgtccactagCCCGTGATCCTTGATTATCTTGCCAGCAAGACAATAAGTTCAAGTGACTTG