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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAAAGAGGCAGCGATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgtaatggctaatcaatggtagtgactaacttcatcagatagtttatactggccggtttcatgacatgactcctatgttctgtattatctaatgaactatt...

Basic information

species Glycine max
transcript GLYMA05G05860.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G05860.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G169694_T01 (Zea mays), 5'ss of exon 4
TCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAAAGAGGCAGCGATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgtaatggctaatcaatggtagtgactaacttcatcagatagtttatactggccggtttcatgacatgactcctatgttctgtattatctaatgaactatt-
|| |||| ||||| |||||||| || || || |||| ||| || ||||| ||||||||  | || |||||||||||||||||||| ||||| || || ||||    | || | |    ||     |  ||  |||  |  |  |    |||   |     ||| |     |||  |    | | ||  |      ||  | 
TCTTAAATACATCTAAGTGGATAGAGGAAGTTCGCACTGAGAGGGGCAGTGATGTTATCATTGTGCTTGTTGGGAACAAAACTGACCTTGTTGACAAGAGgttggtggtatttacacttatctgatttctatatcttagggcatgc-ttggtttgcagtctgaaaatttgcctgggccaagcaatacttcccaggctcgta

upper sequence: GLYMA05G05860.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G075719_T01 (Zea mays), 5'ss of exon 4
TCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAAAGAGGCAGCGATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgt----aatggctaatcaatggtagtgac--taacttcatcagatagtttatactggccggtttcatgacatgactcctatgttctgtattatctaatgaactatt
|| |||| ||||| |||||||| || || || |||| ||| || ||||| ||||||||  | || |||||||||||||||||||| ||||| || || ||||      ||  |  ||  |  |  |  |  ||  ||  |  | |  | |||          ||   |   | | | || || ||| | | || | | | |     
TCTTAAATACATCCAAGTGGATAGATGAAGTTCGCACTGAGAGGGGCAGTGATGTTATCATTGTGCTTGTTGGGAACAAAACTGACCTTGTTGACAAGAGgttggtggtgtttgctctttcctgatttctgtagttttgttggttgctctatgtatattttgtttg-gctttaaattctttggtctctctcatgtcaagta-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325163|gb|FK017534.1|FK017534
EST:     GATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAG                         GCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
genomic: GATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgtaatggcta ... aacacttcagGCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
EST: gi|13252783|gb|BG363686.1|BG363686
EST:     GATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAG                         GCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
genomic: GATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgtaatggcta ... aacacttcagGCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
EST: gi|192321239|gb|FK014329.1|FK014329
EST:     GATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAG                         GCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
genomic: GATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgtaatggcta ... aacacttcagGCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
EST: gi|31459979|gb|CD402007.1|CD402007
EST:     GATGTTATTGTGGTTCTTGTTGGGAACCAAACTGATCTTGTGGATAAAAG                         GCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
genomic: GATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgtaatggcta ... aacacttcagGCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
EST: gi|192322379|gb|FK014620.1|FK014620
EST:     GATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAG                         GCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
genomic: GATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgtaatggcta ... aacacttcagGCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
EST: gi|192321240|gb|FK014330.1|FK014330
EST:     GATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAG                         -CAAGTCTCTACAGAGGAAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTA
genomic: GATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgtaatggcta ... aacacttcagGCAAGTCTCTACAGAGGAA-GGGGAAGCAAAGTCCCGAGAGCTAAACGTTA