Sequence
atgc intronic sequence ATGC exonic sequenceGTTCCAGGTATTGTGTTTGCAAGAGGACCAGCTGTGGCTGTGTTGATGCTCCTGGAATCAGAGGGTGAGACTTATGCTGTTCTTACTGAACAGgtagatgctggtgccttgctgtttttttttatttaattatattttataactggattttcatgttatggctattgttatgttggatattcttatttgtaag
Basic information
species | Glycine max |
transcript | GLYMA05G04150.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G04150.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g03910.1 (Oryza sativa), 5'ss of exon 3
GTTCCAGGTATTGTGTTTGCAAGAGGACCAGCTGTGGCTGTGTTGATGCTCCTGGAATCAGAGGGTGAGACTTATGCTGTTCTTACTGAACAGgtagatgctggtgccttgctgtttttttttatttaattatattttataactggattttcatgttatggctattgttatgttggatattcttatttgtaag
||||||| ||||| ||||||||||| || ||||| ||||||||||| || |||| || | || | ||||| ||||||||||| ||||||||| | | | || |||| | | | ||||| | | | || | |||| | ||| | | || | | |||
ATTCCAGGAATTGTATTTGCAAGAGGGCCTGCTGTTGCTGTGTTGATTCTTTTGGAGTCTAAAGGGCAAACTTACGCTGTTCTTACAGAACAGgtatgttatcatcagttactgtg-------aatggctcatattctggtattagaaccttgtgttgag--tatcgaccgctctgaaaattttag-------
upper sequence: GLYMA05G04150.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G11980.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTCCAGGTATTGTGTTTGCAAGAGGACCAGCTGTGGCTGTGTTGATGCTCCTGGAATCAGAGGGTGAGACTTATGCTGTTCTTACTGAACAGgtagatgctggtgccttgctgtttttttttatttaattatattttataactggattttcatgttatggctattgttatgttggatattcttatttgtaag
|||||||||||||| |||||| ||||||||||||| |||||| | || ||| |||| ||||| |||||||||||||| ||||| |||||||||||| | || ||| | || | | || |||||| |||| | | | |||| ||||| || |
GTTCCAGGTATTGTATTTGCACGAGGACCAGCTGTAGCTGTGCTTATTCTCTTGGAGTCAGATGGTGAGACTTATGCGGTTCTCACTGAACAGgta------------tctctatttatgttcgtgttgttctattttttaac-aaagatcaacattatacgggttgttttggaag-----------------
upper sequence: GLYMA05G04150.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0025g04840.t01 (Vitis vinifera), 5'ss of exon 4
GTTCCAGGTATTGTGTTTGCAAGAGGACCAGCTGTGGCTGTGTTGATGCTCCTGGAATCAGAGGGTGAGACTTATGCTGTTCTTACTGAACAGgtagatgctggtgccttgctgtttttttttatttaattatattttataactggattttcatgttatggctattgttatgttggatattcttatttgtaag----------------------------------------------------------------------
||||| || |||||||||||||||||||||||||| |||||| |||| || |||| |||||||| || | ||| |||||||||| |||||||||| | | | | || ||||| || || | | | | || | || | |||||||| || || ||| | |||
GTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAGgtaggtttttcatgttcatcagtgttctttatgatgcactacttca--atttcctgaacaattaat--caattgttatcttagaaattaaaaaaaaaaaggagagagaaataactatttaaatgcttttattttcttccaaactctgacaaacactcatgcatgtgtaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192321665|gb|FK014009.1|FK014009EST: TGATGCTCCTGGAATCAGAGGGTGAGACTTATGCTGTTCTTACTGAACAG GCAAGGGTTCCTGTTGGAAGAATTATTTTGGAATTGCCTGCTGGAATGTTG
genomic: TGATGCTCCTGGAATCAGAGGGTGAGACTTATGCTGTTCTTACTGAACAGgtagatgctg ... tatttgtaagGCAAGGGTTCCTGTTGGAAGAATTATTTTGGAATTGCCTGCTGGAATGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCCAGGTATTGTGTTTGCAAGAGGACCAGCTGTGGCTGTGTTGATGCTCCTGGAATCAGAGGGTGAGACTTATGCTGTTCTTACTGAACAGgtagatgctggtgccttgctgtttttttttatttaattatattttataactggattttcatgttatggctattgttatgttggatattcttatttgtaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT