Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAAAACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAGgtttgctattttcttttcatcaatgaaaatttgaaagtcgttttgtagcagatggtgcatctttgaacatgtgtaaatagatcatcatctcactaataat...

Basic information

species Glycine max
transcript GLYMA05G03730.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G03730.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G22890.1 (Arabidopsis thaliana), 5'ss of exon 4
TTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAAAACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAGgtttgc---tattttcttttcatcaatgaaaatttgaaagtcgttttgtagcagatggtgcatctttgaacatgtgtaaatagatcatcatctcactaataat
||| ||||| |||| |||| |||||||||| ||||||||||| |||||||| |||||  ||| |||  |||| | |||| || | ||||| |  |||||||||| |    | ||| | | | ||| ||||||  |  |  |    || ||  |  ||||  |   || ||  | | | | |   ||   |||    ||     
TTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAAATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAGgtttccattcactttttatgcttcagtgaaaa--tagacatacccttataagat-tggtttaagcttcaa-gtttatgattctttctgtatccatgtag----

upper sequence: GLYMA05G03730.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G11960.1 (Arabidopsis thaliana), 5'ss of exon 4
TTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAAAACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAGgtttgctattttcttttcatcaatgaaaatttgaaagtcgttttgtagcagatggtgcatctttgaacatgtgtaaatag-atcatcatctcactaataat-----
||||||||| |||| |||||| |||||||| ||||||||||| |||||||| |||||  |||||||  |||||| |||| || | ||| |||  |||||||||   || | | |||  |   |  || | |      | ||||  |      || | ||| | | ||  ||   |||    || ||  | ||  |  |        
TTCTGATGAACAAAGATTCCTTGAAGCTTCAATGGCTTATGTCTCTGGAAATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAAGgttc-ttaatctatttatacttacaaatactatttcttagtttcatccatcttgttacatgtgt-aatttggacaaacgttatgattgtttctttggtttctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209698686|gb|BW656511.1|BW656511
EST:     AACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAG                         ATAGAAGGGAGTGAAATTGTAGCTGAGGGTCCAAGGTGCAGCCTTCGTAGT
genomic: AACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAGgtttgctatt ... tgttttccagATAGAAGGGAGTGAAATTGTAGCTGAGGGTCCAAGGTGCAGCCTTCGTAGT
EST: gi|23056602|gb|BU577755.1|BU577755
EST:     AACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAG                         ATAGAAGGGAGTGAAATTGTAGCTGAG
genomic: AACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAGgtttgctatt ... tgttttccagATAGAAGGGAGTGAAATTGTAGCTGAG
EST: gi|209729083|gb|BW655073.1|BW655073
EST:     AACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAG                         ATAGAAGGGAGTGAAATTGTAGCTGAGGGTCCAAGGTGCAGCCTTCGTAGT
genomic: AACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAGgtttgctatt ... tgttttccagATAGAAGGGAGTGAAATTGTAGCTGAGGGTCCAAGGTGCAGCCTTCGTAGT
EST: gi|192306405|gb|FG997159.1|FG997159
EST:     AACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAG                         ATAGAAGGGAGTGAAATTGTAGCTGAGGGT
genomic: AACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAGgtttgctatt ... tgttttccagATAGAAGGGAGTGAAATTGTAGCTGAGGGT
EST: gi|6455321|gb|AW186004.1|AW186004
EST:     AACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAG                         ATAGAAGGGAGTGAAATTGTAGCTGAGGGTCCAAGGTGCAGCCTTCGTAGT
genomic: AACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAGgtttgctatt ... tgttttccagATAGAAGGGAGTGAAATTGTAGCTGAGGGTCCAAGGTGCAGCCTTCGTAGT
EST: gi|120496159|gb|EH224326.1|EH224326
EST:     AACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAG                         ATAGAAGGGAGTGAAATTGTAGTTGAGGGTCCAAGGTGCAGCCTTCGTAGT
genomic: AACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAGgtttgctatt ... tgttttccagATAGAAGGGAGTGAAATTGTAGCTGAGGGTCCAAGGTGCAGCCTTCGTAGT
EST: gi|209729478|gb|BW655108.1|BW655108
EST:     CCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAG                         ATAGAAGGGAGTGAAATTGTAGCTGAGGGTCCAAGGTGCAGCCTTCGTAGT
genomic: CCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAGgtttgctatt ... tgttttccagATAGAAGGGAGTGAAATTGTAGCTGAGGGTCCAAGGTGCAGCCTTCGTAGT
EST: gi|209698687|gb|BW656512.1|BW656512
EST:     AACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAG                         ATAGAAGGGAGTGAAATTGTAGCTGAGGGTCCAAGGTGCAGCCTTCGTAGT
genomic: AACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAAGgtttgctatt ... tgttttccagATAGAAGGGAGTGAAATTGTAGCTGAGGGTCCAAGGTGCAGCCTTCGTAGT