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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGAAGAAGTTTCCAGCTGCGTCGTTTATTGGTTTGCCAGTTTTATCTGAGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataattcattgaataaattcttatttgttttctgtgacatgaaactcgaatttaaactgttttacttcttgcag

Basic information

species Glycine max
transcript GLYMA05G03110.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26048034|gb|CA784645.1|CA784645
EST:     AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
genomic: AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
EST: gi|8402302|gb|BE057936.1|BE057936
EST:     AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
genomic: AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
EST: gi|254316795|gb|GR828332.1|GR828332
EST:     AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
genomic: AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
EST: gi|208147007|gb|GD949280.1|GD949280
EST:     AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTTCCATGAAGCCCC
genomic: AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTT-CCATGAAGCCCC
EST: gi|208288444|gb|GE087467.1|GE087467
EST:     AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
genomic: AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
EST: gi|193346020|gb|FK310814.1|FK310814
EST:     AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
genomic: AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
EST: gi|11274456|gb|BF324809.1|BF324809
EST:     AGCTTGGATTTGACTTGATGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCTCT
genomic: AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
EST: gi|214009347|gb|DB989937.1|DB989937
EST:     AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
genomic: AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
EST: gi|23729627|gb|BU762911.1|BU762911
EST:     CTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
genomic: CTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
EST: gi|254316796|gb|GR828333.1|GR828333
EST:     AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
genomic: AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
EST: gi|193458791|gb|FK425112.1|FK425112
EST:     AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACAGCAGAAG
genomic: AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAG
EST: gi|193357303|gb|FK323187.1|FK323187
EST:     AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACNGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
genomic: AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
EST: gi|13312181|gb|BG405841.1|BG405841
EST:     AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
genomic: AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
EST: gi|192310695|gb|FK001119.1|FK001119
EST:     AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTCCCATGAAGCCCCT
genomic: AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
EST: gi|13787561|gb|BG650153.1|BG650153
EST:     AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
genomic: AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
EST: gi|13312098|gb|BG405749.1|BG405749
EST:     AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
genomic: AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
EST: gi|207708757|gb|GD689991.1|GD689991
EST:     TATGACCCTGAAAAG                         AGGANAACAGCAGAAGATGCTCTCCCTCATGATTGGTTCCATGAAGCCCCT
genomic: TATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
EST: gi|15661958|gb|BI699329.1|BI699329
EST:     AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
genomic: AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
EST: gi|298184961|gb|HO030174.1|HO030174
EST:     AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAG                         AGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT
genomic: AGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataa ... cttcttgcagAGGATAACAGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGGAAGAAGTTTCCAGCTGCGTCGTTTATTGGTTTGCCAGTTTTATCTGAGCTTGGATTTGACTTGTTGCAGCAGCTGCTAACTTATGACCCTGAAAAGgtagatataattcattgaataaattcttatttgttttctgtgacatgaaactcgaatttaaactgttttacttcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT