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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttaatttgtgatggaatcatttccccaatttacaaataatttgggggttaagacaacggtgaatttaaatggttttaacag

Basic information

species Glycine max
transcript GLYMA05G02740.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02740.3 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttaatttg-tgatggaatcatttccccaatttacaaa--taatttg--ggggttaagacaacggtgaatttaaatggtt--ttaacag
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||  | ||| | | |||| |    |   | ||   | | |  |||      |  | | | |||  ||||||||| ||||| |  |   |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacatcattagattatggcaattatgaactaaccaaaagagataaccccatgaagcttaaacattggtgaatttgaatggatggtgggcag

upper sequence: GLYMA05G02740.3 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G063792_T04 (Zea mays), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttaatttg-tgatggaatcatttccccaatttacaaata-----atttgggggttaagacaacggtgaatttaaatggtt--ttaacag
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||  |  || | | |||  |    | | |  |   | |||||     || ||| | |||| ||   |||||||||  ||   |  | | |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattatgacaattatgcactgacccaaaaatataaccatatggtgcttaa-acgttggtgaatttggattaatggtgagcag

upper sequence: GLYMA05G02740.3 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G179308_T01 (Zea mays), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtat----ttaatttgtgatgg--aatcatttccccaatttacaaataatttgggggttaagacaacggtgaatttaaatggtt--ttaacag
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||     |||  |||||      |   | |  |||||      ||  || ||| | |||| |||  |||||||||  ||   |  | | |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgtggtgcttaa-acattggtgaatttggatcaatggtgagcag

upper sequence: GLYMA05G02740.3 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtat----ttaatttgtgatgg--aatcatttccccaatttacaaataatttgggggttaagacaacggtgaatttaaatggtt--ttaacag----
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||     |||  |||||      |   | |  |||||      ||  || ||| | |||| |||  |||||||||  ||   |  | | |||    
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgtggtgcttaa-acattggtgaatttggatcaatggtgagcaggtct

upper sequence: GLYMA05G02740.3 (Glycine max), 5'ss of exon 4
lower sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 4
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttaat-----ttgtgatgga-atcattt-ccccaatttacaaataatttgggggttaagacaacgg-tgaatttaaa-tggttttaacag
|||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |     ||||||||   || |||| ||||  |||   ||  | |||||| | ||      || |||| ||||| |||||   ||||
TTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtatttagtcaattttgtgatgtctatgattttccccggtttgggaaatagttggggttgaattttgtggatgaacttaaaatggttgctacag

upper sequence: GLYMA05G02740.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtat----ttaatttgtgatggaatcatttccccaattt-acaaataatttgggggttaagacaacg---gtgaatttaaatggttttaacag
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    || | || ||||||  | ||||||||||||| || |||| |||||||||||||||   |    |||||| ||||||||| |||||
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataaaattgaattatgatggcttgatttccccaatttcacgaatattttgggggttaagactttgtggatgaattcaaatggtttcaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394814|gb|EV264685.1|EV264685
EST:     TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT                         GTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
genomic: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtattt ... gttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
EST: gi|21994008|gb|BQ785536.1|BQ785536
EST:     TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT                         GTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
genomic: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtattt ... gttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT