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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagttttaggtggaaaagattaatcttcctatccgtaaattacctatgtagctactaatgtcatttttctactcttggaag

Basic information

species Glycine max
transcript GLYMA05G01270.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G01270.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 4
GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagttttaggtggaaaagattaat-cttcctatccgtaaattacctatgt------agctactaatgtcatttttctactcttggaag----------
| ||||| ||| |||| || || |||||||| |||||||| ||||||||||| || || |||||||| ||||| ||||||||||| |||||||||  |           | ||||| ||| |     | |   | ||| | |      || ||  | | |   | |   | |   | |            
GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACCTACAGTGCGATTTGTTTCTCGGATGTTTCATCCTAACAgtaagcctctctccctgctgtttaatacttgcctgtggcatggttcctgtttcttacaagttataagtatttatgtggcatttcggaacaatagtctaac

upper sequence: GLYMA05G01270.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G110983_T04 (Zea mays), 5'ss of exon 4
GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagttttaggtggaaaagattaatcttcctatccgt-aaattacctatgtagctactaatgtcatttt--tctactcttggaag--------------
| ||||||||| |||||||||| |||| ||| || ||||||||||| ||||||||||| |||||||| ||| | ||||| ||||| ||||||||||| |   |     | ||| |      |       |||| |  |     | |  |    ||  | |  | |||| ||  |                
GTACGTTTAAGCTGACTCTCCAGTTTAATGAAGAATATCCAAACAAACCACCAACTGTGCGATTTGTTTCTAGGATGTTCCATCCTAACAgtaagttgtttctcatccatatttacaagattgcataagaaataagttgatctgattttgtcttcgctgtgatgtactttttaagattccaaagcatgtt

upper sequence: GLYMA05G01270.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G110983_T03 (Zea mays), 5'ss of exon 2
----------GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagttttaggtggaaaagattaatcttcctatccgt-aaattacctatgtagctactaatgtcatttt--tctactcttggaag--------------
          | ||||||||| |||||||||| |||| ||| || ||||||||||| ||||||||||| |||||||| ||| | ||||| ||||| ||||||||||| |   |     | ||| |      |       |||| |  |     | |  |    ||  | |  | |||| ||  |                
TTATTCTCAGGTACGTTTAAGCTGACTCTCCAGTTTAATGAAGAATATCCAAACAAACCACCAACTGTGCGATTTGTTTCTAGGATGTTCCATCCTAACAgtaagttgtttctcatccatatttacaagattgcataagaaataagttgatctgattttgtcttcgctgtgatgtactttttaagattccaaagcatgtt

upper sequence: GLYMA05G01270.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv17s0000g05820.t01 (Vitis vinifera), 5'ss of exon 4
GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagttttaggtg-gaaaagattaatcttcctatccgtaaattacctatgtagctactaatgtcatttttctactcttggaag------------
| |||||||| ||||| || || ||| | ||||| ||||||||||| |||||||| || |||||||| || || ||||| |||||||| ||||||||  |  |  |     |||| | |  ||    || || ||  | | ||||| |   | || |  ||||||  ||                 
GTACGTTTAAATTGACACTTCAGTTTTCGGAGGAGTATCCAAACAAACCACCAACAGTGCGATTTGTTTCCCGTATGTTCCATCCAAATAgtaagttggaactatgttgcaattagtatcacttcatgttaaatatttctttagctgc-ggtttcttacttctaccttttattttgaattggccag

upper sequence: GLYMA05G01270.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S219_106V6.1 (Physcomitrella patens), 5'ss of exon 3
GCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagttttaggtggaaaagattaatcttcctatccgtaaattacctatgtagctactaatgtcatttttctactcttggaag--------------------
| ||||| ||||||||  | |||||||| ||||||||||| |||||||| || || || || ||||||||    |||||||| || |||||||||  ||    | |     ||   |           |   |    || | | ||    ||   |  |   |    |||| |                    
GGACGTTCAAGTTGACGTTGCAATTTACCGAGGATTATCCGAACAAGCCTCCTACAGTGCGTTTTGTCTCGAAGATGTTTCACCCTAACAgtaagcgttttccgcatgcacttgtacacgaggggtcaaggatgttgat-tggttagggttggggtggtcgaagg--tggagggtggattgggattttagctg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192302663|gb|FG994901.1|FG994901
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|151408894|gb|EV278702.1|EV278702
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|15204594|gb|BI427362.1|BI427362
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|120530431|gb|EH258564.1|EH258564
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|21887693|gb|BQ740906.1|BQ740906
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|151398226|gb|EV268104.1|EV268104
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|208204410|gb|GE007817.1|GE007817
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|26047615|gb|CA784343.1|CA784343
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|31460020|gb|CD402048.1|CD402048
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|192299657|gb|FG990010.1|FG990010
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|192326016|gb|FK016198.1|FK016198
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|27427583|gb|CA939103.1|CA939103
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|10235637|gb|BE804525.1|BE804525
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|254349242|gb|GR860040.1|GR860040
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|4397477|gb|AI496474.1|AI496474
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATTCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTT
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|151396142|gb|EV266019.1|EV266019
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|7691194|gb|AW759326.1|AW759326
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|19054147|gb|BM732814.1|BM732814
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACAgtaagtttta ... ctcttggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC