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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGGACTTTTGGGCAAACACTGGAGAAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAATTGCTTGTGCAAGgtaagacagtagatcatgcttttttgaatattatatatataatctgtatatttcatcataaactgagaatttatattgtttcag

Basic information

species Glycine max
transcript GLYMA04G43150.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G43150.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G77690.1 (Arabidopsis thaliana), 5'ss of exon 3
TTGATGGACTTTTGGGCAAACACTGGAGAAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAATTGCTTGTGCAAGgtaagacagtagatcatgcttttttgaatattatatatataatctgtatat-ttcatcataaactgagaatttatattgttt-cag
| |||||| | ||||| ||||| ||||| || |||||  |  | || ||||| ||||| ||||| |||||||| || ||||| || ||||||||||| ||||||   | ||    ||| |  |||   | ||   |||||  | | |  || || |  || || | | |    | ||  ||| |||
TAGATGGATTGTTGGGGAAACATTGGAGGAACCTTGGATTGATCTTTAACTGCACTTTTCTTCTCTTTGGATCTGTTATTCAGCTCATTGCTTGTGCTAGgtaaattaataatcaatgttcattt---tctttattatatggttttttcatattgaaaattaattaatataaaaaatgatttgcag

upper sequence: GLYMA04G43150.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g03540.t01 (Vitis vinifera), 5'ss of exon 3
TTGATGGACTTTTGGGCAAACACTGGAGAAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAATTGCTTGTGCAAGgtaagac--agtagatcatgcttttttgaatattatatatataatctgtatatttcatca------taaactgagaatttatattgtttcag------------------------------
||||||| |||||||| || |||||||| ||| | || ||  |||||||||| ||||||||||| ||||| || || || || || ||||| ||||||||||||  |  |   |   | |      | | ||  || || || || | | | |||   ||      || |    | ||  ||| || || |                               
TTGATGGGCTTTTGGGGAAGCACTGGAGGAATGTAGGCCTACTTTTCAACTGCACTTTCCTTCTCTTTGGCTCCGTGATACAGCTGATTGCCTGTGCAAGgtaaacccaaaaggggaaaggaaaaatcattacaatgtacattatatttctgtttggacagacgaatacatcatgtatacatactggttaatttttcctcaatttccattgatatgctgcag