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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAATTAGATTTGTCTTGGCGGGTGCAAACATAATGTGTCCTGGTCTTACATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTGgtactgtcattatattcttcttaatgattataatgcacaaattttctagtgactttatattaactttcatctcatcatgtatttatctgatttcag

Basic information

species Glycine max
transcript GLYMA04G41130.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G41130.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G09150.1 (Arabidopsis thaliana), 5'ss of exon 6
TGCAATTAGATTTGTCTTGGCGGGTGCAAACATAATGTGTCCTGGTCTTACATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTGgtactg-tcattatattcttcttaatgattataatgcacaaattttctagtgactttatattaactttcatctcatcatgtatttatctgatttcag
||| || |  |||||  || | |||||||||||||||||||||||||||||||| || || || ||| ||||| | ||||| | ||| ||| | || ||||||    | |  | | | ||      | ||  |           || | ||   | |||  | |  || |    | |||| || | | |   || ||
TGCCATAAAGTTTGTTCTGTCTGGTGCAAACATAATGTGTCCTGGTCTTACATCCCCGGGAGGCGTTCTGGATCAAGAAGTCGAGGCTGAAAGGCCAGTGgtatgaataaaaacagtatttccctgggttgca-----------tttttgtttgtatatgctgatcttaa----accatgaatctgtatttgtttag

upper sequence: GLYMA04G41130.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0060g01920.t01 (Vitis vinifera), 5'ss of exon 5
TGCAATTAGATTTGTCTTGGCGGGTGCAAACATAATGTGTCCTGGTCTTACATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTGgtactgtcattatatt---cttcttaatgattataatgcac---aaattttctagtgactttatattaactttcatctcatcatgtatttatctgatttcag
||||||||  |||||| | || || ||||| |||||||||||||| || ||||||||||| ||||||||||| || || || |  | |||| |||| |||||||    | | ||||   || |||||| || ||  ||  |    | | ||   |     | |  |  |  |  ||   ||    | | |    ||| ||||
TGCAATTAAGTTTGTCCTTGCTGGAGCAAATATAATGTGTCCTGGCCTCACATCTCCTGGTGGTGTTTTGGACGATGATGTGGCTGAAGAAAGTCCAGTGgtacgaatactctattatcctccttaat-atcatgctgtgcttggagtatttgtgcattgtcaactgtatctgtatgctatagcttgtct-cgggatgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193363966|gb|FK333048.1|FK333048
EST:     CATCTCCTGGGGGTG-TTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTG                         GCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|58016274|gb|CX703016.1|CX703016
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTG                         GCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|298176132|gb|HO015537.1|HO015537
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTG                         GCCATCATGGCTGAAGGAAAACAGCATGCTCTCGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|193566211|gb|FK524616.1|FK524616
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTG                         GCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|151410220|gb|EV280035.1|EV280035
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTG                         GCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|151413172|gb|EV282980.1|EV282980
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTG                         GCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|7795432|gb|AW780757.1|AW780757
EST:     TCTCCCTGGGGGTGTTTTGGATGGAAGA-GTNGGGGCAGAATGTCCTGTG                         GCCATCATGGCTGAAGGAAAACAGCATGCTCT
genomic: TCTCC-TGGGGGTGTTTTGGATG-AGGAAGTAGGGGCAGAATGTCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGAAAACAGCATGCTCT
EST: gi|10847978|gb|BF070551.1|BF070551
EST:     CATCTCCTGNGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTG                         GCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|298176588|gb|HO023175.1|HO023175
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTG                         GCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|151395221|gb|EV265092.1|EV265092
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAGTGTCCTGTG                         GCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGAAGTAGGGGCAGAATGTCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACAAAA