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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaagctattagagtgctgcttcttattttactgaatggaattcctctgttgttattattagagtcatcatggaatttatctttgtgttgcag

Basic information

species Glycine max
transcript GLYMA04G40980.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574197|gb|CX547172.1|CX547172
EST:     ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG                         TTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
genomic: ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaag ... tgtgttgcagTTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
EST: gi|151398433|gb|EV268304.1|EV268304
EST:     ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG                         TTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
genomic: ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaag ... tgtgttgcagTTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
EST: gi|13240099|gb|BG359408.1|BG359408
EST:     ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG                         TTGAGGCCAAAGAAGAAGATC
genomic: ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaag ... tgtgttgcagTTGAGGCCAAAGAAGAAGATC
EST: gi|208319895|gb|GE116310.1|GE116310
EST:     ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG                         TTGAGGCCAAAGAAGAAGATCAAGTAAACT
genomic: ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaag ... tgtgttgcagTTGAGGCCAAAGAAGAAGATCAAGTAAACT
EST: gi|213592793|gb|DB981297.1|DB981297
EST:     ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG                         TTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
genomic: ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaag ... tgtgttgcagTTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
EST: gi|151410135|gb|EV279943.1|EV279943
EST:     ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG                         TTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
genomic: ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaag ... tgtgttgcagTTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
EST: gi|18719025|gb|BM523129.1|BM523129
EST:     ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG                         TTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
genomic: ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaag ... tgtgttgcagTTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
EST: gi|192324803|gb|FK016874.1|FK016874
EST:     ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG                         TTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
genomic: ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaag ... tgtgttgcagTTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
EST: gi|213618032|gb|DB963665.1|DB963665
EST:     ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG                         TTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
genomic: ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaag ... tgtgttgcagTTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
EST: gi|192317237|gb|FK009810.1|FK009810
EST:     ATCCCCGTGCTGTGAACTGCAGGAAAA-GAAGTGTGGTCACAGCAACTAG                         TTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
genomic: ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaag ... tgtgttgcagTTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
EST: gi|21639171|gb|BM140217.1|BM140217
EST:     ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG                         TTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
genomic: ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaag ... tgtgttgcagTTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
EST: gi|58023032|gb|CX709773.1|CX709773
EST:     ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG                         TTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
genomic: ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaag ... tgtgttgcagTTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
EST: gi|254318519|gb|GR832687.1|GR832687
EST:     ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG                         TTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
genomic: ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaag ... tgtgttgcagTTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
EST: gi|57574032|gb|CX547007.1|CX547007
EST:     ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG                         TTGAGGCCAAAGAAGAAGATCAAGTAAATTCTTTTGATTGCAAGATGGAAT
genomic: ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaag ... tgtgttgcagTTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
EST: gi|21676123|gb|BQ628474.1|BQ628474
EST:     AACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG                         TTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
genomic: AACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaag ... tgtgttgcagTTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
EST: gi|151412758|gb|EV282570.1|EV282570
EST:     ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAG                         TTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT
genomic: ATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaag ... tgtgttgcagTTGAGGCCAAAGAAGAAGATCAAGTAAACTCTTCTGATTGCAAGATGGAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTTATGCCCGTTTACATCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGCAACCAGgtacagtaagctattagagtgctgcttcttattttactgaatggaattcctctgttgttattattagagtcatcatggaatttatctttgtgttgcag

- - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - AGAAGT