1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTATAATCCTGGGAAGCGAAGAATGAATAATAAAATGGATATGGAGAAAAGGGAGGAGATGATTCGGAGAACTGTTTATGTGTCTGACATTGATCAACTGgtataaattttagctgtgttgtggattctcttgcttgctatcttgcaatgttttctgcttgtattcatgcaaatgattgttgtttttctgttggaatatacgctaatgattgttgtttttctgttggaataatgcaattgattgtcgtttttttgttggcatctag
species | Glycine max |
transcript | GLYMA04G40750.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGGAGGAGATGATTCGGAGAACTGTTTATGTGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAGEST: gi|207771332|gb|GD746447.1|GD746447
genomic: GGGAGGAGATGATTCGGAGAACTGTTTATGTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAG
EST: GGGAGGAGATGATTCGGAGAACAGTTTATGTGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCAGCTCTEST: gi|105634386|gb|DW247535.1|DW247535
genomic: GGGAGGAGATGATTCGGAGAACTGTTTATGTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCT
EST: GGGAGGAGATGATTCGGAGAACAGTTTATGTGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCGGCTCTCTTTCTCAACTGTGGCCAGEST: gi|208205444|gb|GE004889.1|GE004889
genomic: GGGAGGAGATGATTCGGAGAACTGTTTATGTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAG
EST: GTTTATGTGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAGEST: gi|151412507|gb|EV282319.1|EV282319
genomic: GTTTATGTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAG
EST: GGGAGGAGATGATTCGGAGAACTGTTTATGTGTCTGACATTGATCAACTG GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAG
genomic: GGGAGGAGATGATTCGGAGAACTGTTTATGTGTCTGACATTGATCAACTGgtataaattt ... tggcatctagGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATAATCCTGGGAAGCGAAGAATGAATAATAAAATGGATATGGAGAAAAGGGAGGAGATGATTCGGAGAACTGTTTATGTGTCTGACATTGATCAACTGgtataaattttagctgtgttgtggattctcttgcttgctatcttgcaatgttttctgcttgtattcatgcaaatgattgttgtttttctgttggaatatacgctaatgattgttgtttttctgttggaataatgcaattgattgtcgtttttttgttggcatctag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA