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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAAGGTATTTGACCTCTTGTACAAGATTGCAGACATTCCCTTCCTGAGCGACCACAAATCTAAGATATACgtaagtacttaagtatagaatattcaaactactatcttccttctcttttggtacccgttgtgtgtcttttattggtatacaaccttatattttatgcttttctgcag

Basic information

species Glycine max
transcript GLYMA04G38000.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208187302|gb|GD984310.1|GD984310
EST:     ACAAGATTGCAGACATTCCCTTCCTGAGCGACCACAAATCTAAGATATAC                         GATCTCATTGAGAAAGCTGAGAAACAGCCAAATCTCACTATTGGAATTCTT
genomic: ACAAGATTGCAGACATTCCCTTCCTGAGCGACCACAAATCTAAGATATACgtaagtactt ... ttttctgcagGATCTCATTGAGAAAGCTGAGAAACAGCCAAATCTCACTATTGGAATTCTT
EST: gi|7924720|gb|AW830746.1|AW830746
EST:     ACAAGATTGCAGACATTCCCTTCCTGAGCGACCACAAATCTAAGATATAC                         GATCTCATTGAGAAAGCTGAGAAACAGCCAAATCTCACTATTGGAATTCTT
genomic: ACAAGATTGCAGACATTCCCTTCCTGAGCGACCACAAATCTAAGATATACgtaagtactt ... ttttctgcagGATCTCATTGAGAAAGCTGAGAAACAGCCAAATCTCACTATTGGAATTCTT
EST: gi|9987271|gb|BE661379.1|BE661379
EST:     ACAAGATTGCAGACATTCCCTTCCTGAGCGACC-CAAATCTAAGATATAC                         GATCTCATTGAGAAAGCTTGAGAAACAGCCAAATCTCACTATTGGAATT
genomic: ACAAGATTGCAGACATTCCCTTCCTGAGCGACCACAAATCTAAGATATACgtaagtactt ... ttttctgcagGATCTCATTGAGAAAGCT-GAGAAACAGCCAAATCTCACTATTGGAATT
EST: gi|19452695|gb|BM954105.1|BM954105
EST:     ACAAGATTGCAGACATTCCCTTCCTGAGCGACCACAAATCTAAGATATAC                         GATCTCATTGAGAAAGCTGAGAAACAGCCAAATCTCACTATTGGAATTCTT
genomic: ACAAGATTGCAGACATTCCCTTCCTGAGCGACCACAAATCTAAGATATACgtaagtactt ... ttttctgcagGATCTCATTGAGAAAGCTGAGAAACAGCCAAATCTCACTATTGGAATTCTT
EST: gi|14125569|gb|BG790007.1|BG790007
EST:     ACAAGATTGCAGACATTCCCTTCCTGAGCGACCACAAATCTAAGATATAC                         GATCTCATTGAGAAAGCTGAGAAACAGCCAAATCTCACTATTGGAATTCTT
genomic: ACAAGATTGCAGACATTCCCTTCCTGAGCGACCACAAATCTAAGATATACgtaagtactt ... ttttctgcagGATCTCATTGAGAAAGCTGAGAAACAGCCAAATCTCACTATTGGAATTCTT