Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACTGGAAAGGCCCTTATGTTGGACGAAATAATCAATTATGTTCAGTCTCTACAGAATCAAGTTGAGgtacccccaatatactcttttttatttacctagttacttcacctcctcattagttatatgtataatgtatatgctaacaagctagctatgcctctaattttctgcag

Basic information

species Glycine max
transcript GLYMA04G37690.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37690.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g33580.1 (Oryza sativa), 5'ss of exon 4
GTGACTGGAAAGGCCCTTATGTTGGACGAAATAATCAATTATGTTCAGTCTCTACAGAATCAAGTTGAGgtacccccaatatactcttttttatttacctagttacttcacctcctcattagttatatgtataatgtatatgctaacaagctagctatgcctctaattttctgcag
|| ||||||||||| || || ||||| || || ||||| ||||| |||||  ||||||| ||||||||||||      ||  |||    |  |   |   | |||        |   | |  ||   |   ||    |||| ||| |   ||   | || | |             
GTCACTGGAAAGGCTCTCATTTTGGATGAGATCATCAACTATGTGCAGTCCTTACAGAACCAAGTTGAGgtaattaacatg-actagaatacaaaaaaaaaattaaa--ggtacaagagtttttgcttagctataacatattctacct--ctgattgtgacacag-----------

upper sequence: GLYMA04G37690.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G882527_T04 (Zea mays), 5'ss of exon 4
GTGACTGGAAAGGCCCTTATGTTGGACGAAATAATCAATTATGTTCAGTCTCTACAGAATCAAGTTGAGgtacccccaatatactcttttttatttacctagttacttcacctcctcattagttatatgtataatgtatatgctaacaa---gctagc--tatgcctctaat--tttctgcag
|| |||||||||||||| ||  |||| || || ||||| ||||| ||||| || ||||| ||||||||||||     |  | |                 |   | |    |||     ||   || ||     | ||  ||  |||||   || |    ||| |  ||     ||| | |||
GTTACTGGAAAGGCCCTGATTCTGGATGAGATTATCAACTATGTGCAGTCCCTGCAGAACCAAGTTGAGgtaaaaaaagaaaaaaaaagcaggagccatgaagaattaatactcagtgctaaaaatgtggcacttctagctgacaacaatttgcaaatcatatactcctgcctgttttttcag

upper sequence: GLYMA04G37690.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G882527_T01 (Zea mays), 5'ss of exon 1
-------------------------------GTGACTGGAAAGGCCCTTATGTTGGACGAAATAATCAATTATGTTCAGTCTCTACAGAATCAAGTTGAGgtacccccaatatactcttttttatttacctagttacttcacctcctcattagttatatgtataatgtatatgctaacaa---gctagc--tatgcctctaat--tttctgcag
                               || |||||||||||||| ||  |||| || || ||||| ||||| ||||| || ||||| ||||||||||||     |  | |                 |   | |    |||     ||   || ||     | ||  ||  |||||   || |    ||| |  ||     ||| | |||
AGAAGGAACAAATGTGCTTTTTTTTGGACAGGTTACTGGAAAGGCCCTGATTCTGGATGAGATTATCAACTATGTGCAGTCCCTGCAGAACCAAGTTGAGgtaaaaaaagaaaaaaaaagcaggagccatgaagaattaatactcagtgctaaaaatgtggcacttctagctgacaacaatttgcaaatcatatactcctgcctgttttttcag