1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATGCCAAGTCTTCGTTGATCTCAGTCACCAGTCACAGAGATAAAGATCTTCTCACCTCAAAATGTGGAGAGTTTGATAGTTTTACATGTTCAAAAGCTGgtaaggaagaaaactttagttcaatagcatgcctcattaatcaagacaaatttttacatggttcttccaagatcattgacaacgctattaacacag
species | Glycine max |
transcript | GLYMA04G37640.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTCACCTCAAAATGTGGAGAGTTTGATAGTTTTACATGTTCAAAAGCTG GCATTTTGCTTTATGCTCTTCACCTTCGCTTTATGTGCCCCTTGCCTAAEST: gi|16106180|gb|BI893920.1|BI893920
genomic: TCTCACCTCAAAATGTGGAGAGTTTGATAGTTTTACATGTTCAAAAGCTGgtaaggaaga ... attaacacagGCATTTTGCTTTATGCTCTTCACCTTCGCTTTATGTGCCCCTTGCCTAA
EST: TCTCACCTCAAAATGTGGAGAGTTTGATAGTTTTACATGTTCAAAAGCTG GCATTTTGCTTTATGCTCTTCACCTTCGCTTTATGTGCCCCTTGCCTAAGAEST: gi|51341160|gb|CO982477.1|CO982477
genomic: TCTCACCTCAAAATGTGGAGAGTTTGATAGTTTTACATGTTCAAAAGCTGgtaaggaaga ... attaacacagGCATTTTGCTTTATGCTCTTCACCTTCGCTTTATGTGCCCCTTGCCTAAGA
EST: TCTCACCTCAAAATGTGGAGAGTTTGATAGTTTTACATGTTCAAAAGCTG GCATTTTGCTTTATGCTCTTCACCTTCGCTTTATGTGCCCCTTGCCTAAGA
genomic: TCTCACCTCAAAATGTGGAGAGTTTGATAGTTTTACATGTTCAAAAGCTGgtaaggaaga ... attaacacagGCATTTTGCTTTATGCTCTTCACCTTCGCTTTATGTGCCCCTTGCCTAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGCCAAGTCTTCGTTGATCTCAGTCACCAGTCACAGAGATAAAGATCTTCTCACCTCAAAATGTGGAGAGTTTGATAGTTTTACATGTTCAAAAGCTGgtaaggaagaaaactttagttcaatagcatgcctcattaatcaagacaaatttttacatggttcttccaagatcattgacaacgctattaacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG