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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGGAATTACGCCGTTAGCATTAGTTTGGAAGGATGAGAACTGTAGTCAATATGTTTTGGACACAGACAGTAAAGGACAGGTTCCAAACCAACAGCAGgtttttcccttgcttcctttatgtcttattgttcattgctttgctttccatgccttttctttactgcctatatttccgttttttgcttttgaggatttct...

Basic information

species Glycine max
transcript GLYMA04G37160.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37160.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv17s0000g01420.t01 (Vitis vinifera), 5'ss of exon 4
GGCAGGAATTACGCCGTTAGCATTAGTTTGGAAGGATGAGAACTGTAGTCAATATGTTTTGGACACAGACAGTAAAGGACAGGTTCCAAACCAACAGCAGgtttttc--ccttgcttcctttatgtcttattgttcattgctttgctttccatgccttttctttactgcctatatttccgttttttgcttttgaggatttct--
  | ||||  || ||  |  |||| |||||||||||||||||||||||||| |||||| | || ||||| |||||||||||||||||||  ||||| ||||| ||    | |||| |   ||   |     | |  |         |||   |||||| |    |   |||  | ||  |    ||     ||| |  || |  
AACTGGAAACACACCACTGACATTGGTTTGGAAGGATGAGAACTGTAGTCAGTATGTTATCGATACAGATAGTAAAGGACAGGTTCCAAGTCAACAACAGgtattgtggcattgcataacttgcttgcctatctcaagaaaagaatttttattgccttgta---agccccttcaatta-gaagcttaaacatgaagtcttttgc