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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAGgtattgactgagcagagaaccacgattgcatttgcaaagtttatattttttgttaggtggttttgtttatttatttgattaatcccaagaaacgtataag...

Basic information

species Glycine max
transcript GLYMA04G36700.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36700.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G016997_T01 (Zea mays), 5'ss of exon 4
CATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAGgtattgactgagcagagaaccacgattgcatttgcaaagtttatattttttgttaggtggttttgtttatttatttgattaat-cccaagaaacgta-taag
|||||  ||||||||||| ||  | || || ||     | |||| ||  |  | ||| | |   ||||||||  ||||||||||||| |||||||||||||    |  ||||  |       || |  ||  ||| |  || ||     | |    |||||   |   ||| | |||||| | |  |    ||  | ||
CATTGTGGATTTTTTCAAGGAGATGCCGCAATTCTGCATAAAGGTTGCACACATTTTGACTGGCCTATATGGTTCAGATTGGGAAAAGAGGCTTGAGgtat--gttatgcagttagtgtgctttcctgttctaaaatccatcttagaattgaacatgttttaacttcatatcttattaatgcacttgttttgtgctcag

upper sequence: GLYMA04G36700.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G033828_T03 (Zea mays), 5'ss of exon 5
CATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAGgtattgactgagcagagaaccacgattgcat-ttgcaaagtttatattttttgttaggtggttttgtttatttatttgatt--aatcccaagaaacgta-taag
|||||  ||||||||||| ||  | ||||||||     | |||| ||  |  | ||| | |   ||||||||  ||||||||||||| ||||||||||||| |  | |    |  |    | |  | | ||  | |    || ||     | |    |||||   | | |||   | |  | | ||  |    ||  | ||
CATTGTGGATTTTTTCAAGGAGATGCCACAGTTCTGCATAAAGGTTGCACACATTTTGACTGGCCTATATGGTTCAGATTGGGAAAAAAGGCTTGAGgtatagtattatgtaattagtgtgctcccctgttttagaacccattttagaattgaacatgttttaactttctatcctaatgcatttccgtgttttgtgctcag

upper sequence: GLYMA04G36700.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0008g02780.t01 (Vitis vinifera), 5'ss of exon 4
CATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAGgtattgactgagcagagaaccacgattgcatttgcaaagt--ttatattttttgttaggtggttttgttta--tttatttgattaatcccaagaaacgtataag------------
|||||  ||||| |||||||| |||||||||||  | || |||| |||||||| | |  | |||||||||||| | |||||||| || |||||||||||| |        ||||        || |  ||  ||  |  |||| |   |  ||  ||   || |||||   ||   ||||   ||        | |                 
CATTGTCGATTTCTTCAAAGAGCTTCCACAGTTCATCGTCAAGGTTGGTCCAATTCTTGGAAATCTATATGGCCCCGATTGGGAGAAAAGGCTTGAGgtactcctgcgttagagggttttttttcctgttttaagatggttatgtcaatgtttgagtaaattggtttagccttcactgatggttcttttatttcttcctttttctctcattag