Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttgattgatttgtgatggattgatttccccaatatacataatgggggttaagggtgaattcaaatggttgcaacag

Basic information

species Glycine max
transcript GLYMA04G36360.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18530.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttgattgatttgtgatggat-tgatttccccaatatacataa-----tgggggttaag----ggtgaattcaaatggttgc--aacag
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||  | |||   || ||     | |||  |  |||| | | ||||     ||  | ||||     ||||||||  ||||| ||     |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacatcattagattatggcaattatgaactaaccaaaagagataaccccatgaagcttaaacattggtgaatttgaatggatggtgggcag

upper sequence: GLYMA06G18530.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G063792_T04 (Zea mays), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttgattgatttgtgatgg--attgatttccccaa---tatacata-atgggggttaag----ggtgaattcaaatggttgc--aacag
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||  |  ||   || |||     ||  | |  |||||   ||||   | |||| | ||||     ||||||||   ||   ||   | |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattatgacaattatgcactgacccaaaaatataaccatatggtgcttaaacgttggtgaatttggattaatggtgagcag

upper sequence: GLYMA06G18530.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G179308_T01 (Zea mays), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttgattgatttgtgatggat-tgatttccccaatatacataa-----tgggggttaag----ggtgaattcaaatggttgc--aacag
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||  |  ||   |||||     | |||  |  || | | | ||||     ||| | ||||     ||||||||   ||   ||   | |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgtggtgcttaaacattggtgaatttggatcaatggtgagcag

upper sequence: GLYMA06G18530.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttgattgatttgtgatggat-tgatttccccaatatacataa-----tgggggttaag----ggtgaattcaaatggttg--caacag----
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||  |  ||   |||||     | |||  |  || | | | ||||     ||| | ||||     ||||||||   ||   ||   | |||    
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgtggtgcttaaacattggtgaatttggatcaatggtgagcaggtct

upper sequence: GLYMA06G18530.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 4
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttgattgattt-gtgatgg--attgatttccccaatat---acataatgggggttaa-------gggtgaattcaaa-tggttgcaacag
|||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||  |  |||| ||||||   ||   |||||||  | |   | ||| | |||||| |       || |||| | ||| ||||||| ||||
TTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtatttagtcaattttgtgatgtctatgattttccccggtttgggaaatagttggggttgaattttgtggatgaacttaaaatggttgctacag

upper sequence: GLYMA06G18530.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttgattgatttgtgatggattgatttccccaatat-----acataatgggggttaag--------ggtgaattcaaatggttgcaacag
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||| || |||||| |||||||||||||| |     | ||  |||||||||||        | ||||||||||||||| ||||||
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataaaattgaattatgatggcttgatttccccaatttcacgaatattttgggggttaagactttgtggatgaattcaaatggtttcaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285557|gb|BI469448.1|BI469448
EST:     TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT                         GTGTTTGAGAAACTT
genomic: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtattt ... gttgcaacagGTGTTTGAGAAACTT