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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCATAGTTCTCTTTGGAATGATGTTCCAGTTTCGCTTTTTCTTGGATAACAGTTTTGTGGTCCTGTTCTTTTTTTTCTTCCTATTTGAACTTAGTATGgtgagaatattcatggaattcttataggcttactgtttacagattcttttgttcattaggttttgtatgatgtgtaacacggcttccctttttatttaag

Basic information

species Glycine max
transcript GLYMA04G34140.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G34140.2 (Glycine max), 5'ss of exon 4
lower sequence: AT3G47730.1 (Arabidopsis thaliana), 5'ss of exon 4
CCTCATAGTTCTCTTTGGAATGATGTTCCAGTTTCGCTTTTTCTTGGATAACAGTTTTGTGGTCCTGTTCTTTTTTTTCTTCCTATTTGAACTTAGTATGgtgagaatattcatggaattcttataggcttactgtttacagattcttttgttcattaggttttgtatgatgtgtaacacggcttccctttttatttaag
||| |  ||||| ||||||||||||||||||||   |||||||||| | ||||||||    ||  | ||| |  ||||| | || ||  |  ||| | |||| | | | |           |  || |  || ||||||||  |  ||| |  ||| ||   ||  || ||      ||  | ||    |  ||      
CCTGACGGTTCTGTTTGGAATGATGTTCCAGTTCGACTTTTTCTTGAAGAACAGTTTCCCTGTTGTCTTCCTACTTTTCATGCTTTTCCAGTTTAATTTGgtaaaactctct---------tgctaagactaatgtttacacctcttttggcacatcag---ttaaattattaacttcattgtttgtggtgctag-----

upper sequence: GLYMA04G34140.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv17s0000g05850.t01 (Vitis vinifera), 5'ss of exon 4
CCTCATAGTTCTCTTTGGAATGATGTTCCAGTTTCGCTTTTTCTTGGATAACAGTTTTGTGGTCCTGTTCTTTTTTTTCTTCCTATTTGAACTTAGTATGgtgagaata--ttcatggaattcttataggcttactgtttacagattcttttgttcattaggttttgtatg-----atgtgtaacacggcttc--cctttttatttaag-------
  |||| |||||||||||||||||||||||||||   ||||||||  | |||||||||   ||  | ||| | || |||||||| ||  |||| | |||||| |   |   ||| |   || || |   | | | || ||  |  |  | ||   ||| |    |  |||      || | || ||    |||  | | ||   ||  |       
TTTCATTGTTCTCTTTGGAATGATGTTCCAGTTTGATTTTTTCTTAAACAACAGTTTTTCAGTTGTATTCCTCTTGTTCTTCCTTTTCCAACTCAATATGgtaatttttctttcttattatcctaaattggtcattgattttatttgttcttagacataaataatcctatttcagcatatatatcattcattcatcgtgttggcttgtgattctag