Sequence
atgc intronic sequence ATGC exonic sequenceGCTGTGTTTCCCTCTCATCCTTCTATAATGACACCGTTGTAAACTGCCCAACCTGCACCTGTGGTTGCCGAAACAAAACAGAACCTGGCAGCTGTGTAGAgtaagtctccaatttatcttttcatagatatttgaaactgtctttttttttgtgtctagtagtttgccaaagtatgctccaaagtaacttttgtcatcatttccccattcttatgatttgtttttctgaatgtcttgcag
Basic information
species | Glycine max |
transcript | GLYMA04G32130.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G32130.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g32110.3 (Oryza sativa), 5'ss of exon 2
GCTGTGTTTCCCTCTCATCCTTCTATAATGACACCGTTGTAAACTGCCCAACCTGCACCTGTGGTTGCCGAAACAA---AACAGAACCTGGCAGCTGTGTAGAgtaagtctccaatttatcttttcatagatatttgaaactgtctttttttttgtgtctagtagtttgccaaagtatgctccaaagtaacttttgtcatcatttccccattcttatgatttgtttttctgaatgtcttgcag
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---GTGTATCTCTCTCATCATTTTATAATGACACAATTGTGAACTGCCCAACATGCTCTTGTGGCTGCCAAAACAATGGGACAAGTCCTGGAAGCTGTGTAAAgtgagttaataaa----------accaaaactcttacttcgcttcttgttgaggcccaacttttctgcaaaat-tgct----aacaagttccatg--catttccacag--------------------------------
upper sequence: GLYMA04G32130.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0083g01160.t01 (Vitis vinifera), 5'ss of exon 4
GCTGTGTTTCCCTCTCATCCTTCTATAATGACACCGTTGTAAACTGCCCAACCTGCACCTGTGGTTGCCGAAACAAAACAG---AACCTGGCAGCTGTGTAGAgtaagtctccaatttatcttttcatagatatttgaaactgtctttttttttgtgtctagtagtttgccaaagtatgctccaaagtaacttttgtcat-catttccccattcttatgatttgtttttctgaatgtcttgcag
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---GTGTCTCGCTCTCATCTTTCTACAATGACACAATTGTACCCTGCCCAACATGCACCTGTGGTTGCCAGAACAACATTACTCAGCCAGGGAGCTGTGTAGAgtaagttc---attcagcca---------agtcaatatta-ctttttgtttgagcct------cctcctgagtttgtagctgaatatttttatttatacccttttatttaattttaaattcttttccattctggtttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10231516|gb|BE800404.1|BE800404EST: GAACCTGGCAGCTGTGTAGA TCCAAATTCCCCACATTTAGATTCAGTTGTATCATCATCTGGCAAAGCTGC
genomic: GAACCTGGCAGCTGTGTAGAgtaagtctcc ... tgtcttgcagTCCAAATTCCCCACATTTAGATTCAGTTGTATCATCATCTGGCAAAGCTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGTGTTTCCCTCTCATCCTTCTATAATGACACCGTTGTAAACTGCCCAACCTGCACCTGTGGTTGCCGAAACAAAACAGAACCTGGCAGCTGTGTAGAgtaagtctccaatttatcttttcatagatatttgaaactgtctttttttttgtgtctagtagtttgccaaagtatgctccaaagtaacttttgtcatcatttccccattcttatgatttgtttttctgaatgtcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG