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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGACCTGTTTCTTACTTGTTGCTGTCAAAACCAGCTAAGGGTGTTGAGAAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGgtatggtcttaaagtagtgatttgttcttgaatcatatactaaagttgcttcaatcatactttgttatttaatgtag

Basic information

species Glycine max
transcript GLYMA04G30350.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G30350.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G20980.2 (Arabidopsis thaliana), 5'ss of exon 4
TGGGACCTGTTTCTTACTTGTTGCTGTCAAAACCAGCTAAGGGTGTTGAGAAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGgta----tggtcttaaagta---gtgatttgttcttgaatca--tatactaaagttgcttcaatc-atactttgttatttaatgtag-------------------------------------------
| || ||  |  | |||||| | |||||||||||||| ||||||||||| || ||||| | ||||||||| || ||||||||||| ||||||||||||| |||    |  | |||    |   ||||    ||    ||| |  || || ||| |   |||||   ||||  | | ||||    |||                                           
TTGGTCCCATGACCTACTTGCTCCTGTCAAAACCAGCAAAGGGTGTTGAAAAATCATTCTGCCTTCTTTCTCTGATTGACAAGATTCTTCCTGTCTACAAgtaagaataatattacgccaactgtgacgcttttagaaattagctagaccaaaataaattcaaaagatacaatttcatttgg-atagtgctcgaaaccataactggtttatgtggcatttattttggcag

upper sequence: GLYMA04G30350.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0009g01080.t01 (Vitis vinifera), 5'ss of exon 4
TGGGACCTGTTTCTTACTTGTTGCTGTCAAAACCAGCTAAGGGTGTTGAGAAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGgtatggtcttaaagtagtgatttgttcttgaatcatatactaaagttgcttcaatcatactttgttatttaatgtag-------------------------
| || ||||| || ||||||||| | |||||||||||||||||| | ||||| || ||||| ||||| ||  | || |||||||| |||||  |||||| ||  ||  |||       |  || |   |||   | ||| | || ||  | || |  |  |  |||  || ||  |                          
TTGGCCCTGTGTCCTACTTGTTGTTATCAAAACCAGCTAAGGGTCTGGAGAAATCCTTTTCTCTTCTCTCGTTGATCGACAAGATTCTTCCAATCTACAAgtgaggagttag------gccttttctatgataaagatagttaatttcatgcatttctggtgggtttcttgataaaatatactaataatgaataccatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209721376|gb|BW654572.1|BW654572
EST:     AAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAG                         GGAAGTTGTGGCTGAACTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGA
genomic: AAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGgtatggtctt ... tttaatgtagGGAAGTTGTGGCTGAACTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGA
EST: gi|208126657|gb|GD923017.1|GD923017
EST:     AAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAG                         GGAAGTTGTGGCTGAACTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGA
genomic: AAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGgtatggtctt ... tttaatgtagGGAAGTTGTGGCTGAACTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGA