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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATCATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTAGGTGTTGTAAATCGTTGCCAGGAGgtagtgattttatactacggtgataaaggcagtattaaactactttaacctttacacatgtcctattagatgttataccacaggtcattgtatacacaca...

Basic information

species Glycine max
transcript GLYMA04G16340.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G16340.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os04g31190.1 (Oryza sativa), 5'ss of exon 4
GGATATCATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTAGGTGTTGTAAATCGTTGCCAGGAGgtagtgattttatactacggtgataaaggcagtattaaact-actttaacctttacacatgtcctattagatgttataccacaggtcattgtatacacaca------
||| ||||||||||| || ||||||||||| ||  | ||||| ||||| || || ||||||   ||||||||||||||||||||||||||| |||| ||||||    || ||    |     || ||  |   |||| | | ||| | | ||| |   || || | || || |||  |        |||  |||    |        
GGACATCATGGACAGGGGCACTGATGCTCGTAACTTTTTACTGGGAAATGTGATCCCCCTCAAGCTTGGTTATGTAGGTGTTGTAAATCGTAGCCAAGAGgtacc--ttctaagacaataccatgaac-cttcattagattgactatcatcttga---atttcttcttcga-gttccatagtctcacatgatatgacaatgtttttt

upper sequence: GLYMA04G16340.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G14120.2 (Arabidopsis thaliana), 5'ss of exon 4
GGATATCATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTAGGTGTTGTAAATCGTTGCCAGGAGgtagtgattttatactacggtgataaaggcagtattaaactactttaacctttacacatgtccta---ttagatgttat-accacaggtcattgtatacacaca
|||||| ||||||||||||||||||||||||||||   | || ||||||   ||||| || |||||||| || || || |||||||||||| | || ||||||     | | |   |     ||  | ||| | || |  ||   |     ||   | |||||||   |||   | | | |||||   |  || | | |     
GGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAGAGgtaaaccctgtttttca-aaaaatttacgca-tgtttacttatgatgtatattgttcttgtcctaccattatgagctgtgaccacttctacttttgtgcttg--

upper sequence: GLYMA04G16340.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G33650.1 (Arabidopsis thaliana), 5'ss of exon 4
GGATATCATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTAGGTGTTGTAAATCGTTGCCAGGAGgtagtgattttata--ctacggtgataaaggcagtattaaactactttaac-ctttacacatgtcctattagatgttataccacaggtcattgtatacacaca
|||||| ||||||| ||||||||||||||| || ||  | || ||||| ||| |||| || |||||||| || || || ||||||||||||||||||||||||    | |  |     ||    ||         ||| |  || | |  | |||     ||||    | || | |  | |  | | ||  |   ||      
GGATATTATGGACAAAGGTACTGATGCTCGAAAACTCCTTCTTGGAAATGTTGTTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTTGCCAGGAGgtaaacctgtggttgctcacaactattgctttttaatttatttagtgtggctcttcttttatgtgacttgagctttattgcttctgttctgtacttattt---

upper sequence: GLYMA04G16340.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 4
GGATATCATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTAGGTGTTGTAAATCGTTGCCAGGAGgtagtgattttatactacggtgat-aaaggcagtattaaactactttaacctttacacatgtcctattagatgttataccacaggtcattgtatacacaca--
||| || |||||||||||||| ||||| || ||| | || || |||||||| |||||||| |||||||||||  |||||||||| |||||| | || |||||| |  |   ||  |  |||  | ||||  | | ||  | |   |  ||||||  | |||     || |  |     ||| |||  |  ||  |    |   
GGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaattttgtggtagtgaaagataattttctatt-tatacaccttttgatatgattggtttggggcag--ccaaagggtaaggttgagttccttg

upper sequence: GLYMA04G16340.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ15047 (Selaginella moellendorffii), 5'ss of exon 4
GGATATCATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTAGGTGTTGTAAATCGTTGCCAGGAGgtagtgattttatactacggtgataaagg--cagtattaaactactttaacctttacacatgtcctattagatgttataccacaggtcattgtatacacaca
 ||||||||||||||||| ||||||||||| ||  |  | || || |  ||||||||| | || ||||||||  | ||||| || |||||| | || ||||||| |  |   | ||  | |  | ||||  |   |||   || ||| ||  ||| ||                                            
TGATATCATGGACAGAGGCACTGATGCTCGCAACTTCCTTCTTGGGAGTGTTATTCCCTTACGCCTTGGTTACATTGGTGTCGTTAATCGTAGTCAAGAGgtagggcatgctttctgggtttgtcaaggagcgtcattggtcttcttcaat-tttgcag-------------------------------------------

upper sequence: GLYMA04G16340.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ37641 (Selaginella moellendorffii), 5'ss of exon 4
GGATATCATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTAGGTGTTGTAAATCGTTGCCAGGAGgtagtgattttatactacggtgataaagg--cagtattaaactactttaacctttacacatgtcctattagatgttataccacaggtcattgtatacacaca
 ||||||||||||||||| ||||||||||| ||  |  | || || |  ||||||||| | || ||||||||  | ||||| || |||||| | || ||||||| |  |   | ||  | |  | ||||  |   |||   || ||| ||  ||| ||                                            
TGATATCATGGACAGAGGCACTGATGCTCGCAACTTCCTTCTTGGGAGTGTTATTCCCTTACGCCTTGGTTACATTGGTGTCGTTAATCGTAGTCAAGAGgtagggcatactttctgagtttgtcaaggagcgtcattggtcttcttcaat-tttgcag-------------------------------------------