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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCTTTGATAATCAACAATATTTTTCAACCATGCAACAGGTTATGCAGAATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattttgccaatttctcccttatatttttttttttcatgaaatttctactggttaatagaatatagatgctgtatatcacag

Basic information

species Glycine max
transcript GLYMA04G12950.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G12950.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0038g04270.t01 (Vitis vinifera), 5'ss of exon 4
-TAGCTTTGATAATCAACAATATTTTTCAACCATGCAACAGGTTATGCAGAATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtc---------------actattttgccaatttctcccttatatttttttttttcatgaaat--ttctactggtta-atagaatatagatgctgtatatca-cag
  || ||||| |  ||||| |||| ||| ||||||||||| |||||||| |||||| | |||||||| ||||||||||| || ||||||||||| ||||||||                  | |||   | ||||||   ||||  |||| | | | || ||||  |   | |  | | ||  ||| |   ||   ||| |   |||
ACAG-TTTGACACACAACAGTATTATTCCACCATGCAACAAGTTATGCAAAATCCTCAATTTATGACTATGGCTGAGCGTCTTGGTAATGCATTAATGCAGgtttgtatggtctttcatgttgtttaagctatttctgtgttattattttatgtatgataaaataatatcatttttcagattaaatttcagtggcatattttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9986080|gb|BE660188.1|BE660188
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|16347929|gb|BI973524.1|BI973524
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|151411377|gb|EV281188.1|EV281188
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|151401177|gb|EV270991.1|EV270991
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|192324548|gb|FK018704.1|FK018704
EST:     ATCCCAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|16996353|gb|BM085725.1|BM085725
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|209712170|gb|BW681376.1|BW681376
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|11274419|gb|BF324772.1|BF324772
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|7145688|gb|AW507610.1|AW507610
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|151403875|gb|EV273685.1|EV273685
EST:     CTAATTTTTATGACCATGGCTGAGCGCCCTGGGTAATGCATTTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAA
genomic: CTAA-TTTTATGACCATGGCTGAGCG-CCTGGGTAATGCA-TTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAA
EST: gi|17023914|gb|BM094948.1|BM094948
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGC
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGC
EST: gi|298180901|gb|HO022340.1|HO022340
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|213605925|gb|DB956639.1|DB956639
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCANATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|192325659|gb|FK019515.1|FK019515
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTGATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|254328123|gb|GR835088.1|GR835088
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTCTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|14125996|gb|BG790434.1|BG790434
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|192323427|gb|FK016378.1|FK016378
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|16347945|gb|BI973540.1|BI973540
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|16347984|gb|BI973579.1|BI973579
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|19347320|gb|BM892200.1|BM892200
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|298173875|gb|HO017211.1|HO017211
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
EST: gi|24206007|gb|BU965260.1|BU965260
EST:     ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAG                         GATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA
genomic: ATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGgtcactattt ... tatatcacagGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAA