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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCAGGTTCTCCCATATTTATAATGAAGGTTGCATCCCAGgttagataatccactgatctttgatctgaatgaacttgattcttggagtcatggtcgtattctgattatctcttttgtttctaagtag

Basic information

species Glycine max
transcript GLYMA04G11550.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g22940.1 (Oryza sativa), 5'ss of exon 8
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCAGGTTCTCCCATATTTATAATGAAGGTTGCATCCCAGgttagataatccactga-------tctttgatctgaatg--aacttgattcttgga-gtcatggtcgtattctgattatctcttttgtttctaagtag--
|||||||||||||||||||| ||| |||| || |||||||||||||| ||||| || ||||| || |||||||| |||| | | ||  | |||||  |    |  |  ||        ||||   || ||||   | ||  | |   |   | |||||  | |||||  | | |  | |||   | | |    
GTTCATAATGATGATGAGGTTAGGACATTATTTAAGCAAGTTCAAGGCGAAGTACCTGGTTCCCCAATATTTATCATGAGGCTAGCTGCTCAGgtggggccttttatggaagttacaccttttcccttaatgttgagttattccggagttattatggttatgttctgtatgtttgatctgtaaattattgaaa

upper sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g21910.1 (Oryza sativa), 5'ss of exon 4
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCAGGTTCTCCCATATTTATAATGAAGGTTGCATCCCAGgttaga-taatccactgatctttgatctgaatgaacttgat---tcttggagtcatggtcgtattctgattatctcttttgtttctaagtag---------
|| ||||||||||||||||| || ||| |||| ||||||||||| || ||||| || || || || |||||||| |||||||| ||||| ||||| |||  ||      |  | ||| | |   |  | ||| |   |  || | |  |   |    | | |  ||    |   | | ||  |           
GTACATAATGATGATGAGGTGAGAGCACTGTTTAAGCAAGTTCAGGGAGAAGTCCCTGGCTCACCTATATTTATTATGAAGGTGGCATCTCAGgtgagaacaacttggagcacattgcttttcctttatttgttctgttgtgcatttgtatccaccatttaac-atgctatccatatatagatgcctgttaagg

upper sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 4
lower sequence: AC197672.3_FGT002 (Zea mays), 5'ss of exon 6
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCAGGTTCTCCCATATTTATAATGAAGGTTGCATCCCAGgttagataatccact----------gatctttgatctgaatgaacttgat-tcttggagtcatggtcgtattct---gattatctcttttgtttctaagtag
|||||||||||||||||||| || ||  |||| |||||||| ||||||||||| || || || || |||||||| |||| | |||||||||||||||| |  |   ||           || | | |||         ||| | | ||  ||| ||  | ||||| |   ||  ||||  |  | |  | |    
GTTCATAATGATGATGAGGTTAGAGCGCTGTTTAAGCAAGTACAAGGTGAAGTCCCTGGCTCCCCAATATTTATCATGAGGCTTGCATCCCAGgttagttttttttctttctttctggaatttataatccatccctttttgttcttttaaagttatccttgtattttctggaacatctgatacgctattgaaa--

upper sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G377341_T02 (Zea mays), 5'ss of exon 4
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCAGGTTCTCCCATATTTATAATGAAGGTTGCATCCCAGgttaga--taatccactgat------ctttgatctga-atgaacttgattcttggagtcatggtcgtattctgattatctcttttgtttctaagtag---------------------------------------------
|||||||| ||||||||||| |||||  ||||||||||||||||||| ||||| || || || || |||||||| ||||| || ||||| ||||| |||  | || ||  |||      | ||| | | |  |   |||    | ||     |   | ||  | ||  ||||      | |||   |||                                              
GTTCATAACGATGATGAGGTGAGGGCGCTGTTCAAGCAAGTTCAAGGAGAAGTCCCTGGCTCACCTATATTTATTATGAAAGTGGCATCTCAGgtgagaactgattcaaagattgtttcccttgttttcatgtcggctttgagcctgactctacctttgttctttg--tatcatgagcgcttcggtgtaatatatatttgttcctgaaagcattcattctgttctttctttgtag

upper sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G858094_T01 (Zea mays), 5'ss of exon 6
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCAGGTTCTCCCATATTTATAATGAAGGTTGCATCCCAGgttagataatccactgatcttt---gatctgaatg----aacttgattcttggagtcatggtcgtat--tctgattatctcttttgtttctaagtag---
|||||||||||||||||||| || ||  |||| |||||||| ||||||||||| || || || || |||||| | |||| | |||||||||||||||| |  |    |    ||     || |  ||     | |||    | |  ||| |   | ||||  ||||      || | || | |    | |   
GTTCATAATGATGATGAGGTTAGAGCGCTGTTTAAGCAAGTACAAGGTGAAGTCCCTGGCTCCCCAATATTTGTCATGAGGCTTGCATCCCAGgttagtttttttttttcctttctgaaatttatattccataccttttcacctttagttacccttgtattttctggaagcttcatctgatgcattattgaca

upper sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 5
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCAGGTTCTCCCATATTTATAATGAAGGTTGCATCCCAGgt-tagataatccactg-atct-ttgatctgaatgaacttgattcttggagtcatggtcgtattctgattatctcttttgtttctaagtag-------------------------------------------
|||||||||||||||||||| |||||  | |||||||||||||| ||||| || ||||| || || ||||| |||||||||||||| || ||||| | | |  |  |||  |||| ||||||  |    |  ||| |  |    |  |     || |  ||  || |    |  |  |   | |                                           
GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAGGGTGAGGTCCCAGGCTCACCAATATTCATAATGAAGGTTGCGTCACAGgtatggctgcttaactatatctcttgatcgaagcttagctgagttcttatctggttactttacta-gagaatttaaagtagtaatgcattgcttttctttacatttcattttttctaattttttttttgtatag

upper sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G36180.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCAGGTTCTCCCATATTTATAATGAAGGTTGCATCCCAGgt--tagataatccactg-atcttt-gatctgaatgaacttgattcttggagtcatg-gtcgtattctgattatctcttttgtttctaagtag
|||||||||||||||||||| |||||  | |||||||||||||||||||| || || || || || |||||||||||||||||||| || |||||  | | || |  |||  |||||| ||||| |||  |  |||||     ||| ||  || | ||  |  |||| | || |||          
GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAAGGTGAGGTCCCGGGCTCGCCGATATTTATAATGAAGGTTGCTTCACAGgtaatggctacttaactatatcttttgatctcaatataactgattaacttagtaatacgtgggatgttctttatatattgtgtag--------

upper sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 5
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCAGGTTCTCCCATATTTATAATGAAGGTTGCATCCCAGgttagataatccactgatctttgatctgaatg---aactt-----------gattcttggagtcatggtcgtattctgattatctcttttgtttct---aagtag
||||||||||||||||| || | ||| ||||||||||||||||||||||||||||| || || |||||||| |  ||||||||||| |||||||| | || ||| ||||  || |||| ||||||   | | |             ||  ||||||     || ||||||||  ||   ||| ||||||   || |||
GTTCATAATGATGATGAAGTCAAGGCTTTGTTCAAGCAAGTTCAAGGTGAAGTTCCTGGCTCCCCCATATTCACGATGAAGGTTGCTTCCCAGgtgatattatctactgcgctctgatttgaatgctgagccttttagatttccagttgctggagtttacttcttattctgacaattcgtttggtttcttcaaactag