1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATTTGCATTCAACAGCACAATCTTGTGGGATCCAAAACGATGGCGACGCCCTTCTTCAAATCCCGTACGACAGTTAGACACAGTGAAGGAGGGTTTTCAAgtatgcctcctattgtctctctttaatctgtccctacctattaatatgttcagatgtcctattgtccttactatttcatatttttagccatttaatatcatctgcaattgttataatcaataaactgatatgacttttggtttgacag
species | Glycine max |
transcript | GLYMA04G09470.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTCTTCAAATCCCGTACGACAGTTAGACACAGTGAAGGAGGGTTTTCAA GAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGTEST: gi|17153212|gb|BM143145.1|BM143145
genomic: CTTCTTCAAATCCCGTACGACAGTTAGACACAGTGAAGGAGGGTTTTCAAgtatgcctcc ... ggtttgacagGAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGT
EST: TCTTCAAATCCCGTACGACCAAG--GGACACAGTGAAGGAGGGTTTTCAA GAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGT
genomic: TCTTCAAATCCCGTACGA-C-AGTTAGACACAGTGAAGGAGGGTTTTCAAgtatgcctcc ... ggtttgacagGAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTGCATTCAACAGCACAATCTTGTGGGATCCAAAACGATGGCGACGCCCTTCTTCAAATCCCGTACGACAGTTAGACACAGTGAAGGAGGGTTTTCAAgtatgcctcctattgtctctctttaatctgtccctacctattaatatgttcagatgtcctattgtccttactatttcatatttttagccatttaatatcatctgcaattgttataatcaataaactgatatgacttttggtttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG