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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAATCGAAGGAAGGGTGATCCTGAGTTTGTTCTTGATTTTGAAGAGATTTATGTTGTTGATTCCAAAACCAAGTCAATTACCAGAGCCAAAGTTTTGgtaaaaaaattgtttgttaattctcagtctagttgcttttggaatattttctgctggctgttgcaactacttgtcttccatagtcatttttctcagcctt...

Basic information

species Glycine max
transcript GLYMA04G09200.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G09200.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g01770.t01 (Vitis vinifera), 5'ss of exon 4
CAAAAATCGAAGGAAGGGTGATCCTGAGTTTGTTCTTGATTTTGAAGAGATTTATGTTGTTGATTCCAAAACCAAGTCAATTACCAGAGCCAAAGTTTTGgtaaaaaaattgttt-gttaattctcagtct----agttgcttttggaatatt-ttctgctggctgttgcaactacttgtcttccatagtcatttttctcagcctt
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CAGGAATCGGAGGTTGGCTGACCCAGAATTTGTGCTCGATTTTGAGGAGATTTATGTAATCGATTCAAAAACAAAATCAATAACCAGAGCTAAAGTTGTGgtgagacactttttttggttatatttagtttccaaaatcgatttcaaaatactcttctcatgtttcgtgtgaaaaaaaaaatattatctttgaatttctt------