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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAAAGAAAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttcttttacatttggatcttttccatattctttcagtttttttttccagttcttttttattttgcctttttgttttttcacagtgggtaggtagatgaatggttgagcttctgttttcagagtatcattttctggttttcatgtattttag

Basic information

species Glycine max
transcript GLYMA04G08530.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G08530.3 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g13440.1 (Oryza sativa), 5'ss of exon 4
TAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAAAGAAAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttcttttacatttggatcttttccatattctttcagtttttttttccagttcttttttattttgcctttttgttttttcacagtgggtaggtagatgaatggttgagcttctgttttcagagtatcattttctggttttcatgtattttag
|||    || ||  | ||||| ||||| ||||| |||| |||| ||||||| ||| | || |||||||| || |||||||||||||||||||| ||| ||||||     ||    ||    |  || |  | ||      ||  |||  |  |  |    |||||||   |  ||     |||     ||  |||    |||                                                      
TAAGACTAATAACATTGATGTGGTTTATACACCATGGTATAATCTAAAGAAGACTCCATCCATGGATGTGGGTCAAGTTGGTTTTCACAACTCTAAATTGgtgagaagcttat--ttcccttacttcctgtgttaggcatgtaatttagtataacttgcatttatttgaacgcttatacatttaggtttgtctagtgttatg------------------------------------------------------

upper sequence: GLYMA04G08530.3 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G157332_T05 (Zea mays), 5'ss of exon 3
TAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAAAGAAAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttcttttacatttggatcttttccatattctttcagtttttttttccagttcttttttattttgcctt-tttgttttttcacagtgggtaggtagatgaatggttgagcttctgttttcagagtatcattttctggttttcatgtattttag
|||||| || ||  | ||||| ||||| || || ||||  ||||| ||||| ||  ||||||||||||| ||||||||||||||||||||| | ||| ||||||   ||    ||||   | ||||| | |||||   || | |||    |  | |  | |  || |    || | ||| | || |||  |  || || | |  |||| |                                               
TAAAGTCAATAACATTGATGTAGTTTATACTCCATGGTACAATTTGAAGAAGACCCCTTCAATGGATGTAGGCCAAGTTGGTTTTCACAACCCTAAATTGgtgagagct----catt---aactttttcttattca--caatgtttacagcaggattatgtacatatgcttttgtatgtatcttgacaaagtttatgt-gctttatggat-----------------------------------------------

upper sequence: GLYMA04G08530.3 (Glycine max), 5'ss of exon 4
lower sequence: AT5G11500.2 (Arabidopsis thaliana), 5'ss of exon 3
TAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAAAGAAAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttcttttacatttggatcttttccatattctttcagtttttttttccagttcttttttattttgcctttttgttttttcacagtgggtaggtagatgaatggttgagcttctgttttcagagtatcattttctggttttcatgtattttag
 || |||||||| || |||||||| ||||| || ||||| || || ||||||||||| || ||||||||||| ||||||||||| ||||| ||||| ||||| |  |  || |  | |  |    ||     | |    |  |    |   ||     |  || |   || |   || | ||  | |         ||  ||  | ||| ||                                            
CAAGGTGAACAACGTTGATGTTGTGTACACTCCGTGGTCCAACTTGAAGAAAACTGCCTCCATGGATGTTGGTCAAGTTGGTTTCCACAATTCAAAGATGgtaagcttcttcatctctaaagaaattttggttgcgcatacataaactgctcaaagtatggttgtaaagcttcgatgatattg-atacctaactcatatttgtttcgttcag--------------------------------------------

upper sequence: GLYMA04G08530.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0008g03810.t01 (Vitis vinifera), 5'ss of exon 3
TAAAGTGAACAATGTCGATGTTGTTTACACACCCTGGTCTAATTTAAAGAAAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttcttttacatttggatcttttccatattctttcagtttttttttccagttcttttttattttgcctttttgttttttcacagtgggtaggtagatgaatggttgagcttctgttttcagagtatcattttctggttttcatgtattttag
 || ||||||||||| || || || ||||| || |||   ||| | |||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||  |  |||  ||||   |||  ||  |  | || ||  |||| ||||       |||||  |  || |   | |            |  || ||||| | || |  || || |||  | |   ||                           
CAAGGTGAACAATGTTGACGTCGTATACACTCCATGGCACAATCTGAAGAAAACTGCTTCTATGGATGTTGGCCAAGTTGGTTTTTACAATTCAAAAATGgtgagcttcttt--attttcttctgctctgtgct-ttgcaacttttatttc-------tttttggtgagcatgcatat------------gaaagatagat-actgatgtagtttttgtgcttaatttag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327626|gb|FK020659.1|FK020659
EST:     AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: gi|192331951|gb|FK026735.1|FK026735
EST:     AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: gi|208250509|gb|GE046930.1|GE046930
EST:     ACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAAACTCAAAAATAG                         GTTCGAACTGTAAGAGTTGAGAAGAGGATAAAT
genomic: ACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAA-CTCAAAAAT-Ggtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAAT
EST: gi|192299133|gb|FG992879.1|FG992879
EST:     AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: gi|18713863|gb|BM522747.1|BM522747
EST:     AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: gi|208048593|gb|GD847524.1|GD847524
EST:     AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: gi|23725673|gb|BU760799.1|BU760799
EST:     AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
EST: gi|192315597|gb|FK007425.1|FK007425
EST:     AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGCCAAGTTGGTTTTCACAACTCAAAAATGgtgatttctt ... tgtattttagGTTCGAACTGTAAGAGTTGAGAAGAGGATAAATGAGATTGTTAACAGGCTA