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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTATTGTCACTCTTCTTACTCTTCAAGTTTCTATCCAAGGACTTGGTGAACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTCgtatgttctttttctcacgtccaatgtgcttatcatttcgagtcaatagaatctttttcaacatatttgctattttatgtctacag

Basic information

species Glycine max
transcript GLYMA04G08510.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G08510.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 3
TGTTATTGTCACTCTTCTTACTCTTCAAGTTTCTATCCAAGGACTTGGTGAACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTCgtatgttctttttctcacgtccaatgtgcttatcatttcgagtcaatagaatcttttt-caacatatttgctattttatgtctacag
|| |  | ||||| |||||| | ||||||||||| || ||||||||||| ||  ||||  | ||||  ||||||||||| ||||||||||| || |||||||||||  | | |    | | |  | || || |   || |  |   |    ||   |    |||   ||     | | ||| | |||
TGCTTCTCTCACTTTTCTTATTGTTCAAGTTTCTCTCAAAGGACTTGGTTAATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtcttatctaaatcatgccttttgtttttttatttgtttatctgtggtcaagtcatgacacggtta----tgtgtgtttgcag

upper sequence: GLYMA04G08510.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 4
TGTTATTGTCACTCTTCTTACTCTTCAAGTTTCTATCCAAGGACTTGGTGAACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTCgtatgttctttttct------cacgtccaatgtgcttatcatttcgagtcaata----gaatctttttcaacatatttgctattttatgtctacag-----------------------
|| | || ||||| ||| | ||||||||||||||||| || |||||||| ||  ||||| ||||| ||||||||||||| ||||||||  | || ||||||||||||||||   |      || | | | | ||||||  ||||    | | ||    |||    |||||     |||| |   |||| || |||                        
TGCTGTTATCACTATTCCTTCTCTTCAAGTTTCTATCAAAAGACTTGGTTAATGCTGTACTGACATGCTACTTCTTTGTGCTTGGGATCATCGCTCTTTCgtatgttctttccgtatggatcatg-ctactatgcttaatatttgatataattatttagaaatagtttcatgtggtttggttcattatctc-acattatctttcttctattttctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26267892|gb|CA818955.1|CA818955
EST:     AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTC                         GGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGA
genomic: AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTCgtatgttctt ... atgtctacagGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGA
EST: gi|120494247|gb|EH222414.1|EH222414
EST:     AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTC                         GGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGA
genomic: AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTCgtatgttctt ... atgtctacagGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGA
EST: gi|6481874|gb|AW201145.1|AW201145
EST:     AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTC                         GGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGA
genomic: AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTCgtatgttctt ... atgtctacagGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGA