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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACTGCAAGTTTGCTGCTCTTGTTCAACATGGGGAAGGAGGTCCACTGACAAAATTTCTTGCACTGGATAAATGTATTCCTGGGCGTGATTTCTTACAGgtataggcatagttctataatttgcagggttaatcttctgtgatagctgtttgagttagtgatacaatcatggcttgttctgtgcctttag

Basic information

species Glycine max
transcript GLYMA04G06310.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G06310.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g08180.t01 (Vitis vinifera), 5'ss of exon 6
ACACTGCAAGTTTGCTGCTCTTGTTCAACATGGGGAAGGAGGTCCACTGACAAAATTTCTTGCACTGGATAAATGTATTCCTGGGCGTGATTTCTTACAGgta----taggcatagttctata-atttgcagggttaatcttctgtgatagctgtttgagttagtgatacaatcatggcttgttctgtgc---ctttag
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ACACTGCAAATTTGCTGCTCTTGTTCAACATGGGGAGGTTGGTCAAGTGACTAAATTTCTTGCACTTGACAAGTGCCTTCCAGGTCGCAAATTTTTGCAGgtagcccttgttattttcatttatgttttaagggct--tttaatgtagtcattgctggaaatta-aatgcctcaattggtggtactgagcgagttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256328|gb|BQ453216.1|BQ453216
EST:     CAAAATTTCTTGCACTGGATAAATGTATTCCTGGGCGTGATTTCTTACAG                         ATTGTGGAAATTGAATCAGATGCAGGACCTTATGAGATTCAGTATGATGAA
genomic: CAAAATTTCTTGCACTGGATAAATGTATTCCTGGGCGTGATTTCTTACAGgtataggcat ... gtgcctttagATTGTGGAAATTGAATCAGATGCAGGACCTTATGAGATTCAGTATGATGAA
EST: gi|51337820|gb|CO981686.1|CO981686
EST:     CAAAATTTCTTGCACTGGATAAATGTATTCCTGGGCGTGATTTCTTACAG                         ATTGTGGAAATTGAATCAGATGCAGGACCTTATGAGATTCAGTATGATGAA
genomic: CAAAATTTCTTGCACTGGATAAATGTATTCCTGGGCGTGATTTCTTACAGgtataggcat ... gtgcctttagATTGTGGAAATTGAATCAGATGCAGGACCTTATGAGATTCAGTATGATGAA