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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGAAAAACCTGTTTAGTAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgactcctacctgtcacttccagatccttatgtctgatgttctccgatttgctaaatccaaagaataactttttttcctaccaaaattttctttccacag

Basic information

species Glycine max
transcript GLYMA04G06250.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G06250.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 4
GTCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGAAAAACCTGTTTAGTAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgactcctacctgtcacttccagatccttatgtctgatgttctccgatttgctaaatccaaagaataactttttttcctaccaaaattttctttccacag
||||||| |||||||| || ||||| ||||| ||  ||||||| ||||||||||||||||| || ||||| ||||||||||| || |||||||| ||| || ||||   ||||  ||||  |    |  ||  | | | |     | |  ||  || | | || ||| | ||   | ||    || |     | | |     |||
GTCATGGAGGTGCTCGAGCAGCTGAATATGTTAAACAAAACCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtt---tcctgactgtgccagtaatgtcactttctatagc-ctgtatgaagtgttcactctaaatactactgtcttaaattatc----ctctgtacatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192313213|gb|FK003333.1|FK003333
EST:     TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAA                         CTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
genomic: TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgac ... ctttccacagCTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
EST: gi|254334939|gb|GR844724.1|GR844724
EST:     ATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAA                         CTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
genomic: ATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgac ... ctttccacagCTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
EST: gi|11412749|gb|BF424760.1|BF424760
EST:     TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAA                         CTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
genomic: TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgac ... ctttccacagCTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
EST: gi|14999246|gb|BI320277.1|BI320277
EST:     TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAA                         CTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAAT
genomic: TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgac ... ctttccacagCTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAAT
EST: gi|27425490|gb|CA937010.1|CA937010
EST:     TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAA                         CTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
genomic: TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgac ... ctttccacagCTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
EST: gi|192313214|gb|FK003334.1|FK003334
EST:     TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAA                         CTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
genomic: TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgac ... ctttccacagCTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
EST: gi|11412737|gb|BF424748.1|BF424748
EST:     TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAA                         CTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
genomic: TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgac ... ctttccacagCTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
EST: gi|209712192|gb|BW681398.1|BW681398
EST:     TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAA                         CTGATGCATACAATCATACTGA
genomic: TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgac ... ctttccacagCTGATGCATACAATCATACTGA
EST: gi|209722645|gb|BW654652.1|BW654652
EST:     TAATTTGATCAGTCACCCAA--TTCATTTCTGACACCAAATCAGCAATAA                         CTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
genomic: TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgac ... ctttccacagCTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
EST: gi|120491886|gb|EH220053.1|EH220053
EST:     CAAAATTCATTTCTGACACCAAATCAGCAATAA                         CTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
genomic: CAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgac ... ctttccacagCTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
EST: gi|213618457|gb|DB969399.1|DB969399
EST:     TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAA                         CTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
genomic: TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgac ... ctttccacagCTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
EST: gi|193489522|gb|FK455847.1|FK455847
EST:     TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAA                         CTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC
genomic: TAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgac ... ctttccacagCTGATGCATACAATCATACTGACACTGAGTTGCTGAAATCAGAAAATAGCC