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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATATGCGCAAAAAACATGACCTTGACGAGAAGCTTGGCAATGATAAGAATGCAAAAGTCCCGCGTGGTTCTCTGGCGAAGTCCAAGCCTACTAACGgtcagatatttcttttctgcacttttaattacttcaatcccaatgaccacactctatggtagtgaatgttggatttcaaaggaacaagagaaaatggtga...

Basic information

species Glycine max
transcript GLYMA04G04530.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405989|gb|EV275804.1|EV275804
EST:     GAATGCAAAAGTCCCGCGTGGTTCTCTGGCGAAGTCCAAGCCTACTAACG                         TTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAG
genomic: GAATGCAAAAGTCCCGCGTGGTTCTCTGGCGAAGTCCAAGCCTACTAACGgtcagatatt ... tgaaatgcagTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAG
EST: gi|151411416|gb|EV281227.1|EV281227
EST:     GAATGCAAAAGTCCCGCGTGGTTCTCTGGCGAAGTCCAAGCCTACTAACG                         TTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAG
genomic: GAATGCAAAAGTCCCGCGTGGTTCTCTGGCGAAGTCCAAGCCTACTAACGgtcagatatt ... tgaaatgcagTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAG
EST: gi|4296663|gb|AI442507.1|AI442507
EST:     GAATGCAAAAGTCCCGCGTGGTTCTCTGGCGAAGTCCAAGCCTACTAACG                         TTTCAAGAGGCAGGAAA
genomic: GAATGCAAAAGTCCCGCGTGGTTCTCTGGCGAAGTCCAAGCCTACTAACGgtcagatatt ... tgaaatgcagTTTCAAGAGGCAGGAAA
EST: gi|8284036|gb|BE021595.1|BE021595
EST:     GAATGCAAAAGTCCCGCGTGGTTCTCTGGCGAAGTCCAAGCCTACTAACG                         TTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAA
genomic: GAATGCAAAAGTCCCGCGTGGTTCTCTGGCGAAGTCCAAGCCTACTAACGgtcagatatt ... tgaaatgcagTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAG
EST: gi|192303058|gb|FG994176.1|FG994176
EST:     GAATGCAAAAGTCCCGCGTGGTTCTCTGGCGAAGTCCAAGCCTACTAACG                         TTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAG
genomic: GAATGCAAAAGTCCCGCGTGGTTCTCTGGCGAAGTCCAAGCCTACTAACGgtcagatatt ... tgaaatgcagTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAG