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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACAAGAATTGGTGAAAGAGGATTTCAAGGGCTCCAAGgttgattgatttctttcgacatttatcatgttctatgtatcgttatgcttttatatcctactaggtctatcactactagtaatatatcactctgtgaacttagttgctgatatatttacgtttcag

Basic information

species Glycine max
transcript GLYMA04G03290.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196538|gb|HO041281.1|HO041281
EST:     GCACAAGAATTGGTGAAAGAGGATTTCAAGGGCTCCAAG                         TGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGCA
genomic: GCACAAGAATTGGTGAAAGAGGATTTCAAGGGCTCCAAGgttgattgat ... tacgtttcagTGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGCA
EST: gi|7795143|gb|AW780540.1|AW780540
EST:     GCACAAGAATTGGTGAAAGAGGATTTCAAGGGCTCCAAG                         TGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGCA
genomic: GCACAAGAATTGGTGAAAGAGGATTTCAAGGGCTCCAAGgttgattgat ... tacgtttcagTGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGCA
EST: gi|208192105|gb|GD990639.1|GD990639
EST:     GATTTCAAGGGCTCCAAG                         TGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGAC
genomic: GATTTCAAGGGCTCCAAGgttgattgat ... tacgtttcagTGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAG-C
EST: gi|58016809|gb|CX703551.1|CX703551
EST:     GCACAAGAA-TGGTNGAAAGAGGATTTCAAGGGCTCCAAG                         TGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGCA
genomic: GCACAAGAATTGGT-GAAAGAGGATTTCAAGGGCTCCAAGgttgattgat ... tacgtttcagTGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGCA
EST: gi|192334033|gb|FK026190.1|FK026190
EST:     GCACAAGAATTGGTGAAAGAGGATTTCAAGGGCTCCAAG                         TGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGCA
genomic: GCACAAGAATTGGTGAAAGAGGATTTCAAGGGCTCCAAGgttgattgat ... tacgtttcagTGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGCA
EST: gi|192323065|gb|FK016316.1|FK016316
EST:     GCACAAGAATTGGTGAAAGAGGATTTCAAGGGCTCCAAG                         TGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGCA
genomic: GCACAAGAATTGGTGAAAGAGGATTTCAAGGGCTCCAAGgttgattgat ... tacgtttcagTGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGCA
EST: gi|192326921|gb|FK015148.1|FK015148
EST:     GCACAAGAATTGGTGAAAGAGGATTTCAAGGGCTCCAAG                         TGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGCA
genomic: GCACAAGAATTGGTGAAAGAGGATTTCAAGGGCTCCAAGgttgattgat ... tacgtttcagTGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGCA
EST: gi|41145774|gb|CK605985.1|CK605985
EST:     GCACAAGAATTGGTGAAAGAGGATTTCAAGGGCTCCAAG                         TGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGT-ATTCAAGCAGCA
genomic: GCACAAGAATTGGTGAAAGAGGATTTCAAGGGCTCCAAGgttgattgat ... tacgtttcagTGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGCA
EST: gi|10848246|gb|BF070781.1|BF070781
EST:     TTGGTGAAAGAGGATTTCAAGGGCTCCAAG                         TGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGCA
genomic: TTGGTGAAAGAGGATTTCAAGGGCTCCAAGgttgattgat ... tacgtttcagTGGTTGGTATTGAGATATGCGGTACTCAACTTGGAGGTTATTCAAGCAGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACAAGAATTGGTGAAAGAGGATTTCAAGGGCTCCAAGgttgattgatttctttcgacatttatcatgttctatgtatcgttatgcttttatatcctactaggtctatcactactagtaatatatcactctgtgaacttagttgctgatatatttacgtttcag

- - - - - - - - AAGAGG
- - - - - - - -  AGAGGA
- - - - - - - - - GAGGAT