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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGGCTTCCTGAAAGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCCgtatgtcacatgtcaccctcaccttgtacttgtttttttgcaataaataacattaaaatacttcaacttacatttgataattgacaccag

Basic information

species Glycine max
transcript GLYMA04G03150.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G03150.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g13150.t01 (Vitis vinifera), 5'ss of exon 3
AACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGGCTTCCTGAAAGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCCgtatgtcac-atgtcaccctcaccttgtacttgtttttttgcaataaataacattaaaatacttcaacttacatttgataattgacaccag---
|  ||||||  |||||||| || |||||||| |||||||| || |||||||| ||||||||||| || ||  | ||||| ||||| || |||||||| ||||||||  |     |||      | | |  ||  | ||   |  |||| || |||      |   || |      ||||   |     ||    
AGTTTGGTGGGATGCGACATGCGTGGAGGCCACAGAGGGGACTGCCTGAAAGTTCTGTTTCAATCCTTCGCACATGGCTGTTTGAGCACTTTCTTCACCCgtatgttcctgaaccacttatttcctttttttcctgttcatcgctaaagaa-atttgtccccactaagtctttcctgatttcttgtttcatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193344309|gb|FK312839.1|FK312839
EST:     AGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCC                         TTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGAC
genomic: AGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCCgtatgtcaca ... ttgacaccagTTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGAC
EST: gi|193454971|gb|FK416918.1|FK416918
EST:     AGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCC                         TTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGAC
genomic: AGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCCgtatgtcaca ... ttgacaccagTTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGAC