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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAGgtacataatgtatagaatctcctatctcttggacatgttgctaacatgcttgtaattgagactctatcttttgcttttgcctgtatgaggtttttggcca...

Basic information

species Glycine max
transcript GLYMA04G03030.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G03030.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G75510.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAGgtacataatgtatagaatctcctatctcttgg---acatgttgctaacatgcttgtaattgagactctatc-------------ttttgcttt--tgcctgtatgaggtttttggcca----------------------------------------------------------
||||||||||||||||| |||||||  |||||||| |||||||||||| ||||| ||||||| |||||||| |||||| | |   |||    |   | ||   || |   | ||| ||  | |||     |  |  ||| |   |              |   ||||   | |       |  |||||  |                                                            
GTTATTGATAATGACCGCGGAGTTCATATGAGGCCCATGCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAGgtaaaaatgttattctcttctcaatgattttgcatatatggtgtaatcattgaaatggtaaagagttagtgaagcaaccaacaatccagcttcaatactcaatccaaatttttatctttcctttgcctgatcagccttacgattgtagaagtttgtgtttgtgtttgaatgagcag

upper sequence: GLYMA04G03030.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g13370.t01 (Vitis vinifera), 5'ss of exon 4
GTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAGgtacataatgtatagaatctcctatctcttggacatgttgctaacatgcttgtaattgagactctatcttttgcttttgcctgtat--gaggtttttggcca-
|| ||||| |||||||| ||||| |  |||||||| |||||||||||| |||||||  || |||||||||||||||||   |   | |    |  |     |  ||    | | | ||| |       ||    |   |||  || |  |    ||||  |  ||  ||  ||  |  
GTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTTGGTCTGATTGCATCCAATTCTAAGgtattcaccttctgtcttggcaccatttatgccactttagttaaaacata---aaacatgctgctaatttgtattagaacctggtttggaaattcctgaacta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207837406|gb|GD806226.1|GD806226
EST:     TAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAG                         GACAAGAAGAAGACACAGCCGGTTAAGCAATCTGATACAAAGAGAACAAGA
genomic: TAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAGgtacataatg ... actctcacagGACAAGAAGAAGACACAGCCGGTTAAGCAATCTGATACAAAGAGAACAAGA
EST: gi|193401525|gb|FK367990.1|FK367990
EST:     AATGAGGCCAAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAG                         GACAAGAAGAAGACACAGCCGGTTAAGCAATCTGATACAAAGAGAACAAGA
genomic: AATGAGGCC-AATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAGgtacataatg ... actctcacagGACAAGAAGAAGACACAGCCGGTTAAGCAATCTGATACAAAGAGAACAAGA
EST: gi|192308908|gb|FK002132.1|FK002132
EST:     TAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAG                         GACAAGAAGAAGACACAGCCGGTTAAGCAATCTGATACAAAGAGA-CAAGA
genomic: TAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAGgtacataatg ... actctcacagGACAAGAAGAAGACACAGCCGGTTAAGCAATCTGATACAAAGAGAACAAGA
EST: gi|192308909|gb|FK002133.1|FK002133
EST:     TAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAG                         GACAAGAAGAAGACACAGCCGGTTAAGCAATCTGATACAAAGAGAACAAGA
genomic: TAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAGgtacataatg ... actctcacagGACAAGAAGAAGACACAGCCGGTTAAGCAATCTGATACAAAGAGAACAAGA
EST: gi|10252793|gb|BE820559.1|BE820559
EST:     TAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAG                         GACAAGAAGAAGACACAGCCGGTTAAGCAATCTGATACAAAGAGAACAAGA
genomic: TAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAGgtacataatg ... actctcacagGACAAGAAGAAGACACAGCCGGTTAAGCAATCTGATACAAAGAGAACAAGA
EST: gi|15814595|gb|BI786870.1|BI786870
EST:     TAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAG                         GACAAGAAGAAGACACAGCCGGTTAAGCAATCTGATACAAAGAGAACAAGA
genomic: TAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAGgtacataatg ... actctcacagGACAAGAAGAAGACACAGCCGGTTAAGCAATCTGATACAAAGAGAACAAGA