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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAGgtaggtgtttacccgcacccttcattgaattgtttggcatatgctatttactaacccatatgaccacgttatagccttgtgcttacctttagttatttaa...

Basic information

species Glycine max
transcript GLYMA04G02530.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G02530.3 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G803949_T02 (Zea mays), 5'ss of exon 4
TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAGgtaggtgtttacccgcacccttcattgaattgtttggcatatgctatttactaacccatatgaccacgttatagccttgtgcttacc-tttagttatttaa-----
||||| |||||||| | ||||||||| |||||||| |||||||||||||| || |||||| | |||| || |      |  |  ||  | |||   |   || |    |  ||   | |     | || | | ||        |   |||  |  | |||||  |     
TGGATACCTGAACTGAAGCATTATGCACCTGGTGTGCCAATAATTCTCGTAGGGACAAAGCTTGgtaagtatgattatgtcctttttttggaa--atccagccttctgtgcttgtaagct----tcacgatgctagttttcgatagatacaatacaattattagagtttt

upper sequence: GLYMA04G02530.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g14670.t01 (Vitis vinifera), 5'ss of exon 4
TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAGgtaggtgtttacccgcaccct--tcattga--attgtttggcatatgctatttactaacccatatgaccacgttatagccttgtgcttacctttagttatttaa
||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| ||| | |||| |  | |  |       |  |  || |  ||  ||| |  | |||| ||        | ||| | || | | |    ||||    |     |||| | | |
TGGATTCCTGAACTGAGGCATTATGCACCTGGTGTTCCAATAATTCTTGTTGGAACCAAGCTTGgtaagattatctctatcatatgcttgttaatcataattttgtgt-tgctgttgttattttcttatcatca-gctgtgagtttgtaa--attgaaagttctctga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014216|gb|CX700958.1|CX700958
EST:     AAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAG                         ATCTTCGGGATGATAAGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAA
genomic: AAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAGgtaggtgttt ... ttgtcggcagATCTTCGGGATGATAAGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAA
EST: gi|14258618|gb|BG881526.1|BG881526
EST:     AAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAG                         ATCTTCGGGATGATAAGCAATTTTTTATGGACCATCCTGGTGCAGTG
genomic: AAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAGgtaggtgttt ... ttgtcggcagATCTTCGGGATGATAAGCAATTTTTTATGGACCATCCTGGTGCAGTG
EST: gi|9563948|gb|BE473457.1|BE473457
EST:     AAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAG                         ATCTTCGGGATGATAAGCGATTTTTTATGGACCATCCTGGTGCAGTGGCAA
genomic: AAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAGgtaggtgttt ... ttgtcggcagATCTTCGGGATGATAAGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAA
EST: gi|192331824|gb|FK024928.1|FK024928
EST:     AAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAG                         ATTTTCGGGATGATAAGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAA
genomic: AAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAGgtaggtgttt ... ttgtcggcagATCTTCGGGATGATAAGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAA
EST: gi|193696036|gb|FK637504.1|FK637504
EST:     AAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAG                         ATCTTCGGGATGATAAGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAA
genomic: AAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAGgtaggtgttt ... ttgtcggcagATCTTCGGGATGATAAGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAA
EST: gi|58024705|gb|CX711446.1|CX711446
EST:     AAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAG                         ATCTTCGGGATGATAAGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAA
genomic: AAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAGgtaggtgttt ... ttgtcggcagATCTTCGGGATGATAAGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAA
EST: gi|58021086|gb|CX707828.1|CX707828
EST:     AAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAG                         ATCTTCGGGATGATAAGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAA
genomic: AAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAGgtaggtgttt ... ttgtcggcagATCTTCGGGATGATAAGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAA
EST: gi|151393592|gb|EV263467.1|EV263467
EST:     AAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAG                         ATCTTCGGGATGATAAGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAA
genomic: AAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAGgtaggtgttt ... ttgtcggcagATCTTCGGGATGATAAGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAA