Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGAGTGGCAAGGCAGATGGTTGAGAGATTTGGATTCAGCAAAAAAATTGGACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatgacctaaaataggttgatcccttttacactgtaaacgttgctcttgaacaccaaaatatatgcctgaccatttcaaatgattgtaatgcag

Basic information

species Glycine max
transcript GLYMA04G02100.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G02100.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g51029.1 (Oryza sativa), 5'ss of exon 4
ACGAGTGGCAAGGCAGATGGTTGAGAGATTTGGATTCAGCAAAAAAATTGGACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatgac--ctaaaataggttgatcccttttacactgtaaacgttgctcttgaacaccaaaatatatgcctgaccatttcaaatgattgtaatgcag----
||| || ||||| || |||||||| ||||||||||||||||| || || || |||||||| ||||||||||||||||||||||| |||||||| || ||||||    |  |   || ||||||  |      |   | |    |||| |    |   |  | || | | | ||    |  |  | ||    | |   ||||     
ACGTGTTGCAAGACAAATGGTTGAAAGATTTGGATTCAGCAAGAAGATCGGGCAAGTTGCGATTGGTGGACCTGGTGGAAATCCTTTCTTGGGCCAGCAGgtaaatcactataactgaaatagacta-----tcaaagaagaaaaacttcttaccctagaagcagagtctgtgaa-aattaactgaagaactagacgtgcaaactt

upper sequence: GLYMA04G02100.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G126361_T03 (Zea mays), 5'ss of exon 5
ACGAGTGGCAAGGCAGATGGTTGAGAGATTTGGATTCAGCAAAAAAATTGGACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatgac--ctaaaataggttgatcccttttacactgtaaacgttgctcttgaac-accaaaatatatgcctgaccatttcaa--atgattgtaatgcag
||| || |||||||||||||| || |||||||||||||| || || || || |||||||| || || ||||| |||||||| || |||||||| |||||||||||||       || |||| | |     |||   |    | | |   |     | |   |  || |  || || ||   | |||||  ||| ||||       
ACGTGTCGCAAGGCAGATGGTCGAAAGATTTGGATTCAGTAAGAAGATCGGCCAAGTTGCGATCGGGGGACCGGGTGGAAACCCTTTCTTGGGGCAACAGgtatgctgctgtaactgaaatggatgttagcctggaattaggaacatactaaaactaagtgaagaagaactaggcatgtaaacttcaacaatggttgtct-----

upper sequence: GLYMA04G02100.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G42270.1 (Arabidopsis thaliana), 5'ss of exon 4
ACGAGTGGCAAGGCAGATGGTTGAGAGATTTGGATTCAGCAAAAAAATTGGACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgc-tatgacctaaaataggttgatcccttttacactgtaa-acgttgctcttgaacaccaaaatatatgcctgaccatttcaaatgattgtaatgcag
 || |||||  | || |||||||||||||| || ||||||||||| ||||||||||||||  |||||||| | || ||||| || ||||||||||||   ||| |  ||| |      |||    | |   ||| | | | ||    |||| |         ||||| || |   ||                         
GCGGGTGGCTCGCCAAATGGTTGAGAGATTCGGGTTCAGCAAAAAGATTGGACAAGTTGCAGTTGGTGGAGCAGGAGGAAACCCTTTCTTGGGTCAAAGTgtaagtatataaaactcgatactcaggt---tttcataatttattgtgttgtttccagctctcaaaacatgt-tttgtttgcag------------------

upper sequence: GLYMA04G02100.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G50250.1 (Arabidopsis thaliana), 5'ss of exon 4
ACGAGTGGCAAGGCAGATGGTTGAGAGATTTGGATTCAGCAAAAAAATTGGACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatgacctaaaataggttgatcccttttacactgtaaacgttgctcttgaacaccaaaatatatgcctgaccatttcaaatgattgtaat-gcag
 || |||||| | || ||| ||||||||||||| ||||||||||| ||||||||||||||  ||||||| |||||||||||||| ||| |||||||||| ||||  |     ||          | |  | |   || |      |||| |     |      | | | | | |    || ||     | |||  | ||||
TCGTGTGGCACGTCAAATGATTGAGAGATTTGGGTTCAGCAAAAAGATTGGACAAGTTGCTGTTGGTGGCCCTGGTGGAAATCCCTTCATGGGTCAACAAgtatattgctttct---------cggtttcat---cattagggttgttggttcgacaagttggagtgt-tacttatatatatccgtgaaatgtttttgcag

upper sequence: GLYMA04G02100.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g00190.t01 (Vitis vinifera), 5'ss of exon 4
ACGAGTGGCAAGGCAGATGGTTGAGAGATTTGGATTCAGCAAAAAAATTGGACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgc-tatgacctaaaataggttgatcccttttacactgtaaacgt-tgctcttgaacaccaaaatatatgcctgaccatttcaaatgattgtaatg-cag
||| ||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |   ||    ||| |||  ||| || |    |   || |  |   |||  || | ||||  |  |   |  ||| |||||    || ||  |||| |||
ACGGGTGGCCAGGCAGATGGTGGAGAGATTTGGGTTCAGCAAAAAGATTGGACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTAGGTCAACAGgtaggaacatattttaagatattttgctctccccaagtgtggagtcccatgcgattcatcaccttaccaa--gattgaacatttttggtgtttcaaatggcag

upper sequence: GLYMA04G02100.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ31931 (Selaginella moellendorffii), 5'ss of exon 4
ACGAGTGGCAAGGCAGATGGTTGAGAGATTTGGATTCAGCAAAAAAATTGGACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatgacctaaaataggttgatcccttttacactgtaaacgttgctcttgaacaccaaaatatatgcctgaccatttcaaatgattgtaatgcag
 ||||| ||| | |||||||| ||| |||||||||||||||| || ||||| || || ||  | |||||  ||||||||||||| ||| | || ||||||||    | |  |  |||||  |         |  | |||| ||      ||||      |     | |  ||                            
GCGAGTTGCACGCCAGATGGTGGAGCGATTTGGATTCAGCAACAAGATTGGCCAGGTCGCTCTCGGTGGCTCTGGTGGAAATCCTTTCCTCGGCCAACAGgt----tcttgcgcaaaatcagaaacaaaagtagaaactgaaacttactctctctttttctttgttcttcgcag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209702714|gb|BW652757.1|BW652757
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|209723842|gb|BW675213.1|BW675213
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|120494712|gb|EH222879.1|EH222879
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|214009003|gb|DB984563.1|DB984563
EST:     TCTTGGGTCAACAG                         ATGTCATCGCAAAAGGA-TACTTCCATGGCAACTGCGGATGTAGTGGATGC
genomic: TCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTAC-TCCATGGCAACTGCGGATGTAGTGGATGC
EST: gi|214008784|gb|DB989600.1|DB989600
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|120494290|gb|EH222457.1|EH222457
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|209720268|gb|BW674610.1|BW674610
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|209708483|gb|BW668315.1|BW668315
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|214006452|gb|DB990682.1|DB990682
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|120494704|gb|EH222871.1|EH222871
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|209698096|gb|BW661039.1|BW661039
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|213590679|gb|DB975562.1|DB975562
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|192306887|gb|FG999934.1|FG999934
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|120494410|gb|EH222577.1|EH222577
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTAC
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTAC
EST: gi|209722698|gb|BW657952.1|BW657952
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|209707248|gb|BW670579.1|BW670579
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|120495954|gb|EH224121.1|EH224121
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|209716348|gb|BW684792.1|BW684792
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|120494718|gb|EH222885.1|EH222885
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCC
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|7795753|gb|AW781150.1|AW781150
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|209709685|gb|BW657214.1|BW657214
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|214008460|gb|DB986721.1|DB986721
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|120495724|gb|EH223891.1|EH223891
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGG
EST: gi|9984609|gb|BE658717.1|BE658717
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|208128293|gb|GD921293.1|GD921293
EST:     GGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|209727706|gb|BW658443.1|BW658443
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|209710129|gb|BW681069.1|BW681069
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|120529263|gb|EH257397.1|EH257397
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|120494207|gb|EH222374.1|EH222374
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|120493960|gb|EH222127.1|EH222127
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|120493985|gb|EH222152.1|EH222152
EST:     GGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|192306886|gb|FG999933.1|FG999933
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|16282177|gb|BI944877.1|BI944877
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|214007663|gb|DB986029.1|DB986029
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|214007949|gb|DB986496.1|DB986496
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|208315182|gb|GE112656.1|GE112656
EST:     CAAGTTGCCTATTTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: CAAGTTGCC-A-TTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|213589709|gb|DB982686.1|DB982686
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|209708811|gb|BW673873.1|BW673873
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|120495615|gb|EH223782.1|EH223782
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|214004256|gb|DB984730.1|DB984730
EST:     GAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|209697646|gb|BW663901.1|BW663901
EST:     ACAAGTTGCCATTGGTGGACCTGGTGGAAATCCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: ACAAGTTGCCATTGGTGGACCTGGTGGAAAT-CCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|213588152|gb|DB984239.1|DB984239
EST:     GACAAGTTGCCATTGCAAGACCTGTTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
EST: gi|214005731|gb|DB989757.1|DB989757
EST:     GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAG                         ATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG
genomic: GACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatg ... tgtaatgcagATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGAGTGGCAAGGCAGATGGTTGAGAGATTTGGATTCAGCAAAAAAATTGGACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGgtatgctatgacctaaaataggttgatcccttttacactgtaaacgttgctcttgaacaccaaaatatatgcctgaccatttcaaatgattgtaatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA