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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtatctgttgttaaaatgagtggtgatcacatcatataaatggatctcggcagttacatgaatttaactgaacatttcag

Basic information

species Glycine max
transcript GLYMA04G01840.8
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208237516|gb|GE032584.1|GE032584
EST:     TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT                         GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGAT
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGAT
EST: gi|207692237|gb|GD676142.1|GD676142
EST:     TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT                         GTGGGCAAAGCTGCTGGA
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGA
EST: gi|208045399|gb|GD841599.1|GD841599
EST:     TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT                         GTGGGCAAAGCTGCTGGAGCAAAATGGAAGA
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGA
EST: gi|193546645|gb|FK503648.1|FK503648
EST:     TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT                         GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGACGCTG
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGATGCTG
EST: gi|193592416|gb|FK545634.1|FK545634
EST:     TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT                         GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACG
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACG
EST: gi|193621980|gb|FK569216.1|FK569216
EST:     TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT                         GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGATGCTG
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGATGCTG
EST: gi|207832519|gb|GD802663.1|GD802663
EST:     TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT                         GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGATGCTG
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGATGCTG
EST: gi|207811703|gb|GD785948.1|GD785948
EST:     AAAGCAGTGTCTGCT                         GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGAT
genomic: AAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGAT
EST: gi|193535155|gb|FK491699.1|FK491699
EST:     TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT                         GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGT
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGT
EST: gi|208196615|gb|GD994910.1|GD994910
EST:     TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT                         GTGGGCAAAGCTGCTGGAGCAAAATAGGAAAGAACGATGTCT
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAAT-GGAA-GA-CGATGTCT
EST: gi|208205358|gb|GE004089.1|GE004089
EST:     TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT                         GTGGGCAAAAGCTGCTGGA
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAA-GCTGCTGGA
EST: gi|207763040|gb|GD731171.1|GD731171
EST:     TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT                         GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGAATGCTG
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGA-TGCTG
EST: gi|193455897|gb|FK417018.1|FK417018
EST:     TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT                         GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGA
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtatctgttgttaaaatgagtggtgatcacatcatataaatggatctcggcagttacatgaatttaactgaacatttcag

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