1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtatctgttgttaaaatgagtggtgatcacatcatataaatggatctcggcagttacatgaatttaactgaacatttcag
species | Glycine max |
transcript | GLYMA04G01840.7 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATEST: gi|207692237|gb|GD676142.1|GD676142
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGAT
EST: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT GTGGGCAAAGCTGCTGGAEST: gi|208045399|gb|GD841599.1|GD841599
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGA
EST: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT GTGGGCAAAGCTGCTGGAGCAAAATGGAAGAEST: gi|193546645|gb|FK503648.1|FK503648
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGA
EST: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGACGCTGEST: gi|193592416|gb|FK545634.1|FK545634
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGATGCTG
EST: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGEST: gi|193621980|gb|FK569216.1|FK569216
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACG
EST: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGATGCTGEST: gi|207832519|gb|GD802663.1|GD802663
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGATGCTG
EST: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGATGCTGEST: gi|207811703|gb|GD785948.1|GD785948
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGATGCTG
EST: AAAGCAGTGTCTGCT GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGATEST: gi|193535155|gb|FK491699.1|FK491699
genomic: AAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGAT
EST: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTEST: gi|208196615|gb|GD994910.1|GD994910
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGT
EST: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT GTGGGCAAAGCTGCTGGAGCAAAATAGGAAAGAACGATGTCTEST: gi|208205358|gb|GE004089.1|GE004089
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAAT-GGAA-GA-CGATGTCT
EST: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT GTGGGCAAAAGCTGCTGGAEST: gi|207763040|gb|GD731171.1|GD731171
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAA-GCTGCTGGA
EST: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGAATGCTGEST: gi|193455897|gb|FK417018.1|FK417018
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGA-TGCTG
EST: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCT GTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGA
genomic: TCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtat ... aacatttcagGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTgtaagtgtatctgttgttaaaatgagtggtgatcacatcatataaatggatctcggcagttacatgaatttaactgaacatttcag
- - - - - - - - - - - - AAGGAA