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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACAAAAAGTGGAATGCTAAAGTATCAGACTTTGGACTGGCCAAGCTCTTAGGGTCTGAGAAAAGCTATGTGACAACGCGCGTAATGGGGACATTCGGgtttgttctttctcaagtcttggagttattttttcatttctcttagtggaagtgaataatactatttacctatatgatttcatcgttcataccacaaatttctgcag

Basic information

species Glycine max
transcript GLYMA04G01440.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01440.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0063g02510.t01 (Vitis vinifera), 5'ss of exon 4
TGGACAAAAAGTGGAATGCTAAAGTATCAGACTTTGGACTGGCCAAGCTCTTAGGGTCTGAGAAAAGCTATGTGACAACGCGCGTAATGGGGACATTCGGgtttgttctttctcaagtcttggagttattttttcatt-tctcttagtggaagtgaa---taa---tactatttacctatatgatttcatcgttca------tacca-caaatttctgcag
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TGGATAGAAAGTGGAACCCAAAAGTATCAGATTTTGGACTAGCCAAGCTCTTAGGATCTGAGGCAAGCTATGTCACTACACGAGTAATGGGAACCTTTGGgtatgttcttcctcggtttcctataatatttttcaataatttgttagttagatttaaacttgaatgtattatttctctgtacacatgtattattaagttatttatcatcatttttctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51344256|gb|CO984989.1|CO984989
EST:     TTAGGGTCTGAGAAAAGCTATGTGACAACGCGCGTAATGGGGACATTCGG                         ATATGTTTCACCTGAGTATGCAAGCACTGGTATGCTTAATGAGGGAAGCGA
genomic: TTAGGGTCTGAGAAAAGCTATGTGACAACGCGCGTAATGGGGACATTCGGgtttgttctt ... atttctgcagATATGTTTCACCTGAGTATGCAAGCACTGGTATGCTTAATGAGGGAAGCGA