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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTTGACAAAGATgtaagggatcttaatgttttttcttttagctagctcaattgtgttctcagattctgacatatttgatctgaacag

Basic information

species Glycine max
transcript GLYMA04G01400.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522813|gb|BU081624.1|BU081624
EST:     CTGTGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTTGACAAAGAT                         GTGTTTCCTACTTGTGCTGCAAATTTT
genomic: CTGTGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTTGACAAAGATgtaagggatc ... atctgaacagGTGTTTCCTACTTGTGCTGCAAATTTT
EST: gi|33389906|gb|CA853113.1|CA853113
EST:     CTGTGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTTGACAAAGAT                         GTGTTTCCTACTTGTGCTGCAAATTTTCCAAACATTGGAATGTCATCAACA
genomic: CTGTGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTTGACAAAGATgtaagggatc ... atctgaacagGTGTTTCCTACTTGTGCTGCAAATTTTCCAAACATTGGAATGTCATCAACA
EST: gi|10843511|gb|BF066800.1|BF066800
EST:     CTGTGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTTGACAAAGAT                         GTGTTTCCTACTTGTGCTGCAAATTTTCCAAACATTGGAATGTCATCAACA
genomic: CTGTGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTTGACAAAGATgtaagggatc ... atctgaacagGTGTTTCCTACTTGTGCTGCAAATTTTCCAAACATTGGAATGTCATCAACA
EST: gi|22522891|gb|BU081702.1|BU081702
EST:     CTGTGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTTGACAAAGAT                         GTGTTTCCTACTTGTGCTGCAAATTTTC
genomic: CTGTGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTTGACAAAGATgtaagggatc ... atctgaacagGTGTTTCCTACTTGTGCTGCAAATTTTC
EST: gi|10846479|gb|BF069354.1|BF069354
EST:     CTGTGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTTGACAAAGAT                         GTGTTTCCTACTTGTGCTGCAAATTTTCCAAACATTGGAATGTCATCAACA
genomic: CTGTGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTTGACAAAGATgtaagggatc ... atctgaacagGTGTTTCCTACTTGTGCTGCAAATTTTCCAAACATTGGAATGTCATCAACA
EST: gi|13125350|gb|BG315920.1|BG315920
EST:     CTGGGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTGGACCAAGAT                         GTGTTTCCTACT
genomic: CTGTGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTTGACAAAGATgtaagggatc ... atctgaacagGTGTTTCCTACT
EST: gi|19348569|gb|BM893101.1|BM893101
EST:     CTGTGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTTGACAAAGAT                         GTGTTTCCTACT
genomic: CTGTGAACCCAAGGCTTGACTTCAGTATGGATGATCTATTTGACAAAGATgtaagggatc ... atctgaacagGTGTTTCCTACT