1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGgtaaacacgccctagcacatgcacatttgtactgtcacacatcatagggttctatagttaagtttcttgccagttcttgtgattttgtgccaaaataatg...
species | Glycine max |
transcript | GLYMA04G01100.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAG GTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCEST: gi|24136864|gb|BU927374.1|BU927374
genomic: CACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGgtaaacacgc ... tgatgcttagGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCC
EST: CACAAATGGAGAANGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAG GTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCEST: gi|18039567|gb|BM307861.1|BM307861
genomic: CACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGgtaaacacgc ... tgatgcttagGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCC
EST: CACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAG GTTGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCEST: gi|16347039|gb|BI972634.1|BI972634
genomic: CACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGgtaaacacgc ... tgatgcttagGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCC
EST: CACAAATGGAGAANGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAG GTTGCAGAGCCCTTGAGAGCAATG
genomic: CACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGgtaaacacgc ... tgatgcttagGTTGCAGAGCCCTTGAGAGCAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGgtaaacacgccctagcacatgcacatttgtactgtcacacatcatagggttctatagttaagtttcttgccagttcttgtgattttgtgccaaaataatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT