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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATAATGCCTCCTTCAGTCCTTGACCGTCTAGgttagttttttaatgcatattctttaatctttccactgatgttgatgtccaactgacaaaagtaacaagagtaatgtcgagtgtaatcttgcag

Basic information

species Glycine max
transcript GLYMA04G00980.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G00980.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0038g00750.t01 (Vitis vinifera), 5'ss of exon 5
TTATAATGCCTCCTTCAGTCCTTGACCGTCTAGgttagtt-ttttaat----gcatattctttaatctttccactgatgttgatg---tccaa----ctgacaaaagtaacaagagtaatgtcgagtg---taatcttgcag
||||||||||||| |||| ||||||||| ||||||||||| ||||| |     | |||  | |    |||    |   |||||||   | ||      | |  ||  || | |   | ||  | | |    ||||| |||||
TTATAATGCCTCCCTCAGCCCTTGACCGCCTAGgttagttcttttagttggaacctatgttatggcatttgttatatggttgatgcacttcagattcttaattaacctatctacgatgataacaaataacttaatcctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23051392|gb|BU577079.1|BU577079
EST:     TTATAATGCCTCCTTCAGTCCTTGACCGTCTAG                         CATTTCTACGTATGGATTATCCAATGATGTTTGAACTCATTTATGGTGCTT
genomic: TTATAATGCCTCCTTCAGTCCTTGACCGTCTAGgttagttttt ... aatcttgcagCATTTCTACGTATGGATTATCCAATGATGTTTGAACTCAGAAATGGTGCTT
EST: gi|151397776|gb|EV267649.1|EV267649
EST:     TTATAATGCCTCCTTCAGTCCTTGACCGTCTAG                         CATTTCTACGTATGGATTATCCAATGATGTTTGAACTCAGAAATGGTGCTT
genomic: TTATAATGCCTCCTTCAGTCCTTGACCGTCTAGgttagttttt ... aatcttgcagCATTTCTACGTATGGATTATCCAATGATGTTTGAACTCAGAAATGGTGCTT
EST: gi|192302630|gb|FG994882.1|FG994882
EST:     TTATAATGCCTCCTTCAGTCCTTGACCGTCTAG                         CATTTCTACGTATGGATTATCCAATGATGTTTGAACTCAGAAATGGTGCTT
genomic: TTATAATGCCTCCTTCAGTCCTTGACCGTCTAGgttagttttt ... aatcttgcagCATTTCTACGTATGGATTATCCAATGATGTTTGAACTCAGAAATGGTGCTT
EST: gi|213620291|gb|DB961436.1|DB961436
EST:     TTATAATGCCTCCTTCAGTCCTTGACCGTCTAG                         CATTTCTACGTATGGATTATCCAATGATGTTTGAACTCAGAAATGGTGCTT
genomic: TTATAATGCCTCCTTCAGTCCTTGACCGTCTAGgttagttttt ... aatcttgcagCATTTCTACGTATGGATTATCCAATGATGTTTGAACTCAGAAATGGTGCTT